AlignACE 3.0 10/20/99 AlignACE2 -i CY/CY_operons019_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944249658 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 phoH 131 phosphate starvation-inducible protein #1 hypothetical 181 hypothetical protein #2 hypothetical 31 hypothetical protein #3 serS 90 seryl-tRNA synthetase #4 hemolysin 104 hemolysin #5 pilM 184 membrane protein #6 hypothetical 81 hypothetical protein #7 hypothetical 39 hypothetical protein #8 gspD 80 general secretion pathway protein D #9 pilT 300 twitching mobility protein #10 hemolysin 289 hemolysin #11 pilT 300 twitching motility protein #12 gspF 103 general secretion pathway protein F #13 hypothetical 181 hypothetical protein #14 gspE 217 general secretion pathway protein E #15 gspE 222 general secretion pathway protein E #16 hypothetical 119 hypothetical protein #17 hypothetical 45 hypothetical protein Motif 1 TAGCTGACTCCTGGGGGCAACCAAAATCAT 16 39 1 GGTTGGCCGACTGGGGTCAATTTGTTCGGT 15 40 0 ATCCGGTAGGCCGGGGATAAATTTAGTGGG 10 250 0 AAAGCAAGCACAGGGGCTAACAAAAGTTTA 11 244 0 GAACTCTCCCCCGGGCACAAACTGACTCAG 10 164 1 GCGGTAATCGCTGGCGATAATAAGACAAAA 5 157 0 TGCCCAGGCTATGGGGATAATCTGGTGGCC 1 89 0 CGTAAATTTTCAGGGGCCCAGCTCAATCGC 10 86 1 GCCCTCCAGTCTAGGGGAAAATAGCCATGG 4 51 1 ATTGCTTAAACTAGGGGAAAGTACTAAGTT 15 70 1 CATTAAGGACATAGGGACAAACGTGGGGAA 9 84 1 AAAGGGGACAACTCAGGAAGG 0 120 0 CTTTGCACGACTGGGCCCTAACCCAGACCG 13 10 0 AGTTCGGTGGCTAGGGATCA 7 0 0 TCCCCATAGCCTGGGCACATTGTAGACGGA 1 102 1 TCACCATTGGCTAGGGAATAGTTTACATCA 14 174 1 CCTAAAAATTCTGGCCCCAAAAAATAGGTT 10 54 0 GGCTTTCCCAATGGGGTCAAGGATTCCGAA 10 137 1 CAAAGGTTTACCGGGGGTTAGCTGTGCCAC 9 253 1 GACTGGAGGGCTAGGAACAAACTTGTCACA 4 32 0 GTCGAATTCAATGGGGACATTGGGGACATT 9 177 0 TAAAAATAGACTGGGAAAAATTTCGCGTTT 10 16 1 AAATCTATGGCAAGGGCAAAAACAATCGTT 13 159 0 TAATGAGATTCAAGCGACAAATTGTTAACA 9 59 0 TCCCCTAATCCCAGGGATTACGAAAA 15 6 0 TGGTAGGGTTCTGGCGCACACTGTCAACAA 5 82 0 TGCCAACTTGCTGGGGGTTTTTACGGAGAA 11 134 0 GGTCCGTCACCTAGGCCATATACTCGACTC 0 86 1 ********** MAP Score: 19.1112 Motif 2 AAAGGGGACAACTCAGGAAGG 0 120 0 GTGCCCAGGCTATGGGGATAATCTGGTGGCC 1 89 0 ATCCCCATAGCCTGGGCACATTGTAGACGGA 1 101 1 GGTTATGGGGGGAGGATTAATGAC 2 17 0 GCCCTCCAGTCTAGGGGAAAATAGCCATGGT 4 51 1 CATTAAGGACATAGGGACAAACGTGGGGAAA 9 84 1 CAATGGGGACATTGGGGACATTATTTAATAG 9 168 0 CAAAGGTTTACCGGGGGTTAGCTGTGCCACA 9 253 1 ATAAAAATAGACTGGGAAAAATTTCGCGTTT 10 15 1 TAACCTATTTTTTGGGGCCAGAATTTTTAGG 10 53 1 CGTAAATTTTCAGGGGCCCAGCTCAATCGCC 10 86 1 GGGCTTTCCCAATGGGGTCAAGGATTCCGAA 10 136 1 CAGTTTGTGCCCGGGGGAGAGTTCGGAATCC 10 157 0 ATCCGGTAGGCCGGGGATAAATTTAGTGGGG 10 249 0 AGTTGGCAAATTTGGGCAAAGAAGTCCAAGG 11 156 1 CAAAGCAAGCACAGGGGCTAACAAAAGTTTA 11 244 0 AGCTTAATAGTTTGGGGTCAGATGATTAGGG 12 54 0 CGGTCTGGGTTAGGGCCCAGTCGTGCAAAG 13 9 1 AAATCTATGGCAAGGGCAAAAACAATCGTTT 13 158 0 TCACCATTGGCTAGGGAATAGTTTACATCAT 14 174 1 TTTCGTAATCCCTGGGATTAGGGGATTTAAC 15 11 1 TGGTTGGCCGACTGGGGTCAATTTGTTCGGT 15 40 0 ATTGCTTAAACTAGGGGAAAGTACTAAGTTT 15 70 1 CAGAATGCCTCAAGGGAGCAAAATCCTATCA 15 141 0 ATAGCTGACTCCTGGGGGCAACCAAAATCAT 16 38 1 ******* *** MAP Score: 18.8355 Motif 3 TGGATAAAACGCCGAGTCAGTGGGGAAGGATGGCAA 0 50 1 TCTACAATGTGCCCAGGCTATGGGGATAATCTGGTG 1 92 0 GGCTATTTTCCCCTAGACTGGAGGGCTAGGAACAAA 4 41 0 CCGGGGGTTAGCTGTGCCACAAGTGCAAAATCCGGT 9 263 1 GCCGCAGATAGCCATGGCACCAGGGCTTTCCCAATG 10 114 1 TGACTCAGGAGCACAGACAGTCGGGATGTTTTCTTC 10 186 1 ATTGGAATCGGCCACCCCAAAGGTGGGTTTTGTAAA 11 66 0 GCCCAAATTTGCCAACTTGCTGGGGGTTTTTACGGA 11 137 0 CTTATATCCTACCATGCCCGCCGGGCAAGCTTGCAT 13 67 1 GTAAACTATTCCCTAGCCAATGGTGACCATCGGTGA 14 164 0 TTTTCGTAATCCCTGGGATTAGGGGATTTAACCGAA 15 10 1 GGCGGAGATAGCTGACTCCTGGGGGCAACCAAAATC 16 31 1 TCCAGCCGTTGCCCACCCATTGGTGCT 17 28 1 *** * * ***** MAP Score: 17.4145 Motif 4 GGACAAACGTGGGGAAACAAATGCGTCGTTTTGT 9 98 1 TGGCAAATTTGGGCAAAGAAGTCCAAGGAATTGA 11 159 1 CGAATTCAATGGGGACATTGGGGACATTATTTAA 9 171 0 CTCCAGTCTAGGGGAAAATAGCCATGGTCTATAA 4 54 1 CCCATAGCCTGGGCACATTGTAGACGGATATCAT 1 104 1 CAATAGGTGTGGGCAAGGTGAACAAACCAAGCCG 6 10 0 CCGAGTCAGTGGGGAAGGATGGCAAGGTCCGTCA 0 61 1 GGGTTTTTACGGAGAAAAAATGGACTGAAGACAA 11 116 0 AAAATAGACTGGGAAAAATTTCGCGTTTATCATT 10 18 1 AAATTGTGACGGAGACAATTAACC 12 89 1 GCTTAAACTAGGGGAAAGTACTAAGTTTAGTAGG 15 73 1 GGCGATCGCCGGACAAATAGAGGAAAGTGGCATT 11 211 1 GGGAAAAGTTAACCAAAAGCTGAA 1 167 0 ACTCTCCCCCGGGCACAAACTGACTCAGGAGCAC 10 166 1 TTTGTGCCCGGGGGAGAGTTCGGAATCCTTGACC 10 151 0 TGCAGACAGAGGAGACGATACAGCCTGCAGCAAC 9 218 0 GTCTGGGTTAGGGCCCAGTCGTGCAAAGTTAGTG 13 12 1 TCTATGGCAAGGGCAAAAACAATCGTTTAAGATC 13 152 0 GTATGGCATCGGACAAGGAGAGGAGTGAAGCAAT 6 40 0 CATCAATGATGGACAAATTCCAAACTTCCTACAT 16 66 1 TGCAAAATCCGGTGAAAAAATCCC 9 286 1 AAAGGGGACAACTCAGGAAGGGTTTGAG 0 113 0 ******* * ** MAP Score: 16.225 Motif 5 CAAGTTTGTTCCTAGCCCTCCAGTCTAGGGG 4 37 1 AAAATTTTTACAGTGCCTACCTGAACATATG 1 135 0 AGGTGACGGACCTTGCCATCCTTCCCCACTG 0 67 0 TTATATCCTACCATGCCCGCCGGGCAAGCTT 13 68 1 TAAATTTATCCCCGGCCTACCGGATTTCTAT 10 255 1 ATTTTCCAGCCGTTGCCCACCCATTGGTGCT 17 24 1 AATAAGTTTACAAAACCCACCTTTGGGGTGG 11 60 1 GATATTCTCTCCCTCCCATCCTTACTCCTTA 5 122 1 AGACCATTGCCATTACCGTCCAACGAATAGT 0 13 0 GCTTTGTTGATTGCCCTCCGACTGGATTA 5 8 1 GGTTTGTTCACCTTGCCCACACCTATTGCTT 6 16 1 CCTATTGCTTCACTCCTCTCCTTGTCCGATG 6 37 1 AGCAAGACCTACCCAGATTCGTA 14 204 0 ATACTCGACTCAAACCCTTCCTGAGTTGTCC 0 105 1 TGATCCCTAGCCACCGAACTTTGTT 7 4 1 ATTGCCTTCTCCATGCCGTCT 9 0 0 GCCATGGCACCAGGGCTTTCCCAATGGGGTC 10 124 1 TGTCGTCAGCCACTCCCCACTAAATTTATCC 10 235 1 GTCAAGGATTCCGAACTCTCCCCCGGGCACA 10 152 1 GGCAGGGGCGACCGAGATAACAG 15 209 0 GCACTTGTGGCACAGCTAACCCCCGGTAAAC 9 258 0 ATTCCCTAGCCAATGGTGACCATCGGTGATT 14 162 0 ** ******** MAP Score: 15.8459 Motif 6 TCAAGGCCACCAGATTATCCCCATAGCCTGGGCACATTGTAG 1 85 1 AAAAGCTGAACAAAATTTTTACAGTGCCTACCTGAACATATG 1 135 0 CCTCCGAGTCATTAATCCTCCCCCCATAACC 2 9 1 CACTTTGTTGCTTATTGTTGACAGTGTGCGCCAGAACCCTAC 5 68 1 ATAATTTTGTCTTATTATCGCCAGCGATTACCGCAACCCCC 5 153 1 CAAAACGACGCATTTGTTTCCCCACGTTTGTCCCTATGTCCT 9 89 0 TGCTGCAGGCTGTATCGTCTCCTCTGTCTGCATCAAAGGTTT 9 220 1 CTGTCTGCATCAAAGGTTTACCGGGGGTTAGCTGTGCCACAA 9 243 1 TCAGGGGCCCAGCTCAATCGCCGCAGATAGCCATGGCACCAG 10 95 1 CCACTCCCCACTAAATTTATCCCCGGCCTACCGGATTTCTAT 10 244 1 TGCCACTTTCCTCTATTTGTCCGGCGATCGCCACAAATGGTC 11 201 0 TAAATCCAGCCTTATATCCTACCATGCCCGCCGGGCAAGCTT 13 57 1 ATTATCATTGTGAATAATCACCGATGGTCACCATTGGCTAGG 14 147 1 GATTTAACCGAACAAATTGACCCCAGTCGGCCAACCATTGCT 15 34 1 ATCAAAATTGCGCTAAATACCCAAGGCTGACAATTTTTCCTA 15 103 0 CAGGAGTCAGCTATCTCCGCCCTCCGATCGCCATGGTTAAAA 16 10 0 GACAGCCCAACATTTTCCAGCCGTTGCCCACCCATTGGTGCT 17 13 1 * * * ** * * *** MAP Score: 15.5102 Motif 7 CGCCGAGTCAGTGGGGAAGGATGGCAAGGTC 0 59 1 GTATATGGCCTAGGTGACGGACCTTGCCATC 0 78 0 GGTTATGGGGGGAGGATTAATGACTC 2 15 0 CCCTAGACTGGAGGGCTAGGAACAAACTTGT 4 36 0 TCTTGGTAAGTTGGTTTCGGAATTTT 4 88 1 GGGGGTTGCGGTAATCGCTGGC 5 172 0 AGCAATAGGTGTGGGCAAGGTGAACAAACCA 6 15 0 ACAAAGTTCGGTGGCTAGGGATCA 7 3 0 CATTATTTAATAGGTTAAAGACTTTTTTCTG 9 150 0 AACCTATTTTTTGGGGCCAGAATTTTTAGGG 10 54 1 CTTTCCCAATGGGGTCAAGGATTCCGAACTC 10 139 1 TTAGTGGGGAGTGGCTGACGACAAACATCAA 10 227 0 AGAAATCCGGTAGGCCGGGGATAAATTTAGT 10 253 0 ACCCACCTTTGGGGTGGCCGATTCCAATCGT 11 74 1 GTTGGCAAATTTGGGCAAAGAAGTCCAAGGA 11 157 1 TGCTTTGGCTGTGGGTTCAGAACTTATAGGA 11 268 1 GCTTAATAGTTTGGGGTCAGATGATTAGGGG 12 53 0 CGGTCTGGGTTAGGGCCCAGTCGTGCAAAGT 13 10 1 ATGGTCACCATTGGCTAGGGAATAGTTTACA 14 170 1 TTGCTTAAACTAGGGGAAAGTACTAAGTTTA 15 71 1 GGCAGGGGCGACCGAGATAACAGTT 15 207 0 ATGGCGATCGGAGGGCGGAGATAGCTGACTC 16 18 1 ****** **** MAP Score: 15.0105 Motif 8 GCCGAGTCAGTGGGGAAGGATGGCAAGGTCCGTCACCTA 0 60 1 TGGGGATAATCTGGTGGCCTTGAACTTGGAAACCAAAAG 1 69 0 TCCCCATAGCCTGGGCACATTGTAGACGGATATCATATG 1 102 1 CCCTCCAGTCTAGGGGAAAATAGCCATGGTCTATAATCT 4 52 1 GGTCTATAATCTTGGTAAGTTGGTTTCGGAATTTT 4 79 1 GGGATGGTTTCAGTGGAGTATGGCATCGGACAAGGAGAG 6 52 0 ACCTATTTTTTGGGGCCAGAATTTTTAGGGTCGTAAATT 10 55 1 CCATGGCTATCTGCGGCGATTGAGCTGGGCCCCTGAAAA 10 92 0 TCCGGTAGGCCGGGGATAAATTTAGTGGGGAGTGGCTGA 10 240 0 ACAACTGGCACAGGGACGATTGGAATCGGCCACCCCAAA 11 81 0 CTTAATAGTTTGGGGTCAGATGATTAGGGGGATTGCACC 12 44 0 CCGAATCCGATCGGGAGTTATGACGATGTTATTTCAATT 14 71 1 GGTTGGCCGACTGGGGTCAATTTGTTCGGTTAAATCCCC 15 31 0 CCTATCAAAATTGCGCTAAATACCCAAGGCTGACAATTT 15 109 0 * *** *** * ** MAP Score: 11.9997 Motif 9 CGGACCTTGCCATCCTTCCCCACTGACTCGGCGTTTTATCC 0 51 0 CACCAGATTATCCCCATAGCCTGGGCACATTGTAGACGGAT 1 92 1 GCTTTGTTGATTGCCCTCCGACTGGATTACAGTAA 5 4 1 GACTGATAGATATTCTCTCCCTCCCATCCTTACTCCTTAAT 5 114 1 CTTGGTTTGTTCACCTTGCCCACACCTATTGCTTCACTCCT 6 13 1 CTCCTCTCCTTGTCCGATGCCATACTCCACTGAAACCATCC 6 49 1 TGATCCCTAGCCACCGAACTTTGTTTTTAGAG 7 1 1 TCGCCGCAGATAGCCATGGCACCAGGGCTTTCCCAATGGGG 10 112 1 GAAGAAAACATCCCGACTGTCTGTGCTCCTGAGTCAGTTTG 10 181 0 GATTGATGTTTGTCGTCAGCCACTCCCCACTAAATTTATCC 10 225 1 CCACTAAATTTATCCCCGGCCTACCGGATTTCTATCCCTAA 10 251 1 ACCTTTGGGGTGGCCGATTCCAATCGTCCCTGTGCCAGTTG 11 78 1 TGACCATTTGTGGCGATCGCCGGACAAATAGAGGAAAGTGG 11 200 1 GGCATTAAACTTTTGTTAGCCCCTGTGCTTGCTTTGGCTGT 11 239 1 GCCTTATATCCTACCATGCCCGCCGGGCAAGCTTGCATTTT 13 65 1 ACGATTGTTTTTGCCCTTGCCATAGATTTTT 13 160 1 CCGAACAAATTGACCCCAGTCGGCCAACCATTGCTTAAACT 15 41 1 AGTCAGCTATCTCCGCCCTCCGATCGCCATGGTTAAAA 16 7 0 CAACATTTTCCAGCCGTTGCCCACCCATTGGTGCT 17 20 1 * ** * *** * * * MAP Score: 10.0273 Motif 10 GCCTAGGTGACGGACCTTGCCATCCTTCCCCACTG 0 67 0 AGTCATTAATCCTCCCCCCATAACC 2 16 1 TGACAGTGTGCGCCAGAACCCTACCATTGACTGAT 5 86 1 TGTCTTATTATCGCCAGCGATTACCGCAACCCCC 5 160 1 CTCCTCTCCTTGTCCGATGCCATACTCCACTGAAA 6 49 1 TTCTGTTTTTCGTCAGTTGTTTAACAAAACGACGC 9 120 0 GTGGCACAGCTAACCCCCGGTAAACCTTTGATGCA 9 248 0 CCCAGCTCAATCGCCGCAGATAGCCATGGCACCAG 10 102 1 TCCGAACTCTCCCCCGGGCACAAACTGACTCAGGA 10 161 1 TAGTGGGGAGTGGCTGACGACAAACATCAATCATA 10 222 0 CCACTAAATTTATCCCCGGCCTACCGGATTTCTAT 10 251 1 TTCCTCTATTTGTCCGGCGATCGCCACAAATGGTC 11 201 0 TCCCCCTAATCATCTGACCCCAAACTATTAAGCTC 12 51 1 TAACTTTGCACGACTGGGCCCTAACCCAGACCG 13 8 0 AGCCTTATATCCTACCATGCCCGCCGGGCAAGCTT 13 64 1 AAGAGTAGTCCGTCGGATCTTAAACGATTGTTTTT 13 137 1 TTGTGAATAATCACCGATGGTCACCATTGGCTAGG 14 154 1 CCGAACAAATTGACCCCAGTCGGCCAACCATTGCT 15 41 1 CAGCTATCTCCGCCCTCCGATCGCCATGGTTAAAA 16 10 0 AGATAGCTGACTCCTGGGGGCAACCAAAATCATCA 16 36 1 CAACATTTTCCAGCCGTTGCCCACCCATTGGTGCT 17 20 1 ** *** * * *** MAP Score: 6.55467 Motif 11 CCGAGTCAGTGGGGAAGGATGGCAAGGTCCGT 0 61 1 CTCCAGTCTAGGGGAAAATAGCCATGGTCTAT 4 54 1 GACTGGATTACAGTAAGGTTTCAGTTGAAGCT 5 29 1 AATTATTAAGGAGTAAGGATGGGAGGGAGAGA 5 127 0 AGGGTAATTTTGCTGGTAGATTA 8 1 1 AAAATAGACTGGGAAAAATTTCGCGTTTATCA 10 18 1 TAGAAAAGCCCAGTAATATTGCTTTACCTTAA 11 18 1 GGTTTTTACGGAGAAAAAATGGACTGAAGACA 11 117 0 TAAAAACCCCCAGCAAGTTGGCAAATTTGGGC 11 141 1 CGGACAAATAGAGGAAAGTGGCATTAAACTTT 11 220 1 CATGCCCGCCGGGCAAGCTTGCATTTTGCAAA 13 79 1 TAACTCTAGTGAGGAATTTTGCAAAATGCAAG 13 96 0 GTGTTGAATGTAGGAAGTTTGGAATTTGTCCA 16 75 0 *** *** **** MAP Score: 6.02359 Motif 12 AACGCCGAGTCAGTGGGGAAGGATGGCAAGGTCCGTCAC 0 57 1 GGGGACAACTCAGGAAGGGTTTGAGTCGAGTATATGGCC 0 99 0 TCCCCATAGCCTGGGCACATTGTAGACGGATATCATATG 1 102 1 TAACCAAAAGCTGAACAAAATTTTTACAGTGCCTACCTG 1 143 0 GGTCTATAATCTTGGTAAGTTGGTTTCGGAATTTT 4 79 1 GCTTTGTTGATTGCCCTCCGACTGGATTAC 5 1 1 GGGATGGTTTCAGTGGAGTATGGCATCGGACAAGGAGAG 6 52 0 ATACAGCCTGCAGCAACGAATATAACCGGTCGAATTCAA 9 196 0 TCTCCTCTGTCTGCATCAAAGGTTTACCGGGGGTTAGCT 9 237 1 CCATGGCTATCTGCGGCGATTGAGCTGGGCCCCTGAAAA 10 92 0 GTCTGTGCTCCTGAGTCAGTTTGTGCCCGGGGGAGAGTT 10 165 0 TCCGGTAGGCCGGGGATAAATTTAGTGGGGAGTGGCTGA 10 240 0 ACAACTGGCACAGGGACGATTGGAATCGGCCACCCCAAA 11 81 0 ATTTTACGAGCTTAATAGTTTGGGGTCAGATGATTAGGG 12 54 0 GTTAGGGAAGCTGAAGAGTAGTCCGTCGGATCTTAAACG 13 124 1 GGGGATTTAACCGAACAAATTGACCCCAGTCGGCCAACC 15 31 1 * * * * *** *** MAP Score: 4.72402 Motif 13 TTCCAATCGTCCCTGTGCCAGTTGTCTTCAGTCCAT 11 95 1 TCCGTAAAAACCCCCAGCAAGTTGGCAAATTTGGGC 11 137 1 TTTTGTTAGCCCCTGTGCTTGCTTTGGCTGTGGGTT 11 249 1 CTACCATGCCCGCCGGGCAAGCTTGCATTTTGCAAA 13 75 1 AATGATAATCCTCCGGTCTAGTTAACTGGCCGCACT 14 120 0 CACTACTCATCACTGTTGTTGTTTGCTGAACTGTTA 15 179 1 CTACATTCAACACTGTTCCAGATTACCGCTCCACC 16 94 1 * *** ** ** * * MAP Score: 3.559 Motif 14 TGTGACAAGTTTGTTCCTAGCCCTCCAGTCTAGGGG 4 32 1 GCTTTGTTGATTGCCCTCCGACTGGATTA 5 3 1 GGCTTGGTTTGTTCACCTTGCCCACACCTATTGCTT 6 11 1 ACTCCTCTCCTTGTCCGATGCCATACTCCACTGAAA 6 48 1 TGATCCCTAGCCACCGAACTTTGTTT 7 0 1 ATTAAATAATGTCCCCAATGTCCCCATTGAATTCGA 9 170 1 AGGCTGTATCGTCTCCTCTGTCTGCATCAAAGGTTT 9 226 1 TCTTCTATGATTGATGTTTGTCGTCAGCCACTCCCC 10 217 1 CCCACTAAATTTATCCCCGGCCTACCGGATTTCTAT 10 250 1 AATCGTCCCTGTGCCAGTTGTCTTCAGTCCATTTTT 11 99 1 GTGACCATTTGTGGCGATCGCCGGACAAATAGAGGA 11 199 1 AACGATTGTTTTTGCCCTTGCCATAGATTTTT 13 159 1 ACCGAACAAATTGACCCCAGTCGGCCAACCATTGCT 15 40 1 TTGCTGAACTGTTATCTCGGTCGCCCCTGCC 15 201 1 ** ** * *** ** MAP Score: 1.13951