AlignACE 3.0 10/20/99
AlignACE2 -i CY/CY_operons020_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944249799
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	hypD	300	hydrogenase isoenzymes formation protein HypD
#1	ureG	300	urease accessory protein G
#2	hypothetical	300	hypothetical protein
#3	hypB	60	hydrogenase expression/formation protein HypB
#4	hypothetical	75	hypothetical protein
#5	speB	300	agmatine ureohydrolase
#6	srrA	180	SrrA
#7	argB	263	N-acetylglutamate kinase
#8	ureF	127	urease accessory protein F
#9	hypE	48	hydrogenase expression/formation protein HypE
#10	hypothetical	52	hypothetical protein
#11	hypothetical	129	hypothetical protein
#12	ureA	157	urease gamma subunit
#13	hypC	77	hydrogenase expression/formation protein HypC
#14	ctaB	150	cytochrome c oxidase folding protein
#15	hypothetical	249	hypothetical protein
#16	hypB	182	hydrogenase isoenzymes formation protein HypB
#17	hypothetical	300	hypothetical protein
#18	glpK	52	glycerol kinase
#19	hypothetical	105	hypothetical protein
#20	hypA	149	hydrogenase expression/formation protein HypA
#21	ureB	35	urease beta subunit
#22	hypothetical	77	hypothetical protein
#23	sterol-C-methyltransferase	68	sterol-C-methyltransferase
#24	hypF	45	transcriptional regulatory protein HypF
#25	hypothetical	138	hypothetical protein

Motif 1
ATTGCCGATTATTCCCCTGCCACTGGTAAGA	2	224	1
TTTACTTCAGATTTCCCTGCCCTAGGCGATT	15	160	0
TAAATATCCAATTTCCCAGCCCCATTTTTGT	16	11	0
AAAAAATCAATTTACCCTGCCCATGGCAATA	17	21	0
TTCGTTTTTTATTCCCCAGGCAATGGCTCCA	0	63	0
CCCGACCGTAATGACCCTGCCTTTCGCCGTT	2	29	1
AACGGCAGAAATTTCCCTCCCTAGGGAGACT	14	25	0
ATTCTCAGTAATGCCCCTGGCAATGGGTCCG	7	118	0
TAATACTTAATTTTCCCTGCTGTTTTAACTA	23	43	1
ATAATGGCTCTTTGCCCACCCCCACCCTAGT	0	93	0
TTTTTTATTCTTTCCCCAGCTTTTACG    	6	163	1
GTGATGTCAAATTTCCCTAGCCCTCCTCCAT	0	186	0
ACATTGAGCTTTGCCCCCGGCGATCGCCTAG	17	136	1
AGTCTTCCACATAGCCCAGCCGTTGTCTTTA	7	29	1
GCCTACCGCCATTACCCCAGCTAACCCCTAC	1	27	0
TTGTTCTGGGATTGCCCTGTCTGGAAAATGA	20	109	1
CCAAGTTTTCTTTCCCCTGGGGAGAGTGTTG	15	214	1
 AGTTGAACCATGGCCCAGGTTTGGTTTTTC	13	9	1
TTAAGCGAGTATTCCCCAACTGGACAAAAAA	14	75	0
CGGTCAGGGTATTACCCAACTTTTTATTTTT	12	104	1
CATAGCGAAAATTGTCCAGGCCGTGATTTTG	11	60	0
CTCCCGGGCTTTTGTCCCGCCGTGTAGCTAG	5	204	0
TGACATTGTTTTTGCCCCCCTAAGTCAGCAA	17	216	1
 GTTCGGTTCTTTGCCCTCCGGTTTTTTCCT	19	9	1
CAGGAATTGCATTGCCATGGCCACTTCACAA	6	124	0
          *** *******
MAP Score: 39.1579

Motif 2
GCCTAACCAACCCTGCCCCGGCAAATCAACGG	1	205	1
AATCAATTTACCCTGCCCATGGCAATAGTTTT	17	16	0
TGTCAAATTTCCCTAGCCCTCCTCCATAAGAG	0	181	0
CTTCAGATTTCCCTGCCCTAGGCGATTGATTT	15	155	0
     AATAACCTTCCCCCTCGGGCGGAAATA	16	165	0
AAACAATATCCCCTACCCTAGCTAGGGATGAT	5	94	0
   AGTTGAACCATGGCCCAGGTTTGGTTTTT	13	7	1
GCAGAAATTTCCCTCCCTAGGGAGACTTAAAG	14	20	0
CTTTATCTAACCCTTCCGCCCGTAGAGATGGG	7	64	1
ACCGTAATGACCCTGCCTTTCGCCGTTTGGAT	2	33	1
         GCCCTAACCCACCGAGACTAAAT	3	1	1
CCGATTATTCCCCTGCCACTGGTAAGAGTTAA	2	228	1
AGCCAAGTTTTCTTTCCCCTGGGGAGAGTGTT	15	212	1
TGGCTCTTTGCCCACCCCCACCCTAGTTCGTT	0	88	0
TGTTTTTTATTCTTTCCCCAGCTTTTACG   	6	161	1
TGCAGCGGACCCATTGCCAGGGGCATTACTGA	7	113	1
TCAAAAAAAATCCTTGCTCTGGTTGGCC    	18	6	0
TTATTTGGAGCCATTGCCTGGGGAATAAAAAA	0	58	1
ATCCGGTAAACCATGGCCATGCATAAGCACGG	25	64	0
        GGCCCTGCCCAACTTTGTTACCCT	23	2	1
   GTTCGGTTCTTTGCCCTCCGGTTTTTTCC	19	7	1
AGTTGAAAATCCCTTACTCCCCAGCAATTTCA	17	253	1
AATTGGTCAGCCCGACCCTGCCG         	8	114	1
TAACATTGAGCTTTGCCCCCGGCGATCGCCTA	17	134	1
TGCCAATTCCTCCTTCCTTTCCTCCC      	13	61	1
TGAGAAAGTTTCTTGCCTACCGCCATTACCCC	1	40	0
CTCGGACCAGCCATTCCCCACATCACCAGGAA	5	138	0
TGCCTACCGCCATTACCCCAGCTAACCCCTAC	1	27	0
          **** **** **
MAP Score: 35.7319

Motif 3
TTATTTGGAGCCATTGCCTGGGGAATAAAAAACGA	0	58	1
GCCTAACCAACCCTGCCCCGGCAAATCAACGGAAG	1	205	1
TAGCGATTAACTCTGGCCTATGGTTTGTTCATAAC	2	102	1
AAGCCCTTAACTCTTACCAGTGGCAGGGGAATAAT	2	231	0
AAATAATCGGCGATCGCCTTTGGGAGAGGTAAAA 	4	51	1
CACGGCGGGACAAAAGCCCGGGAGACTTTAATGAC	5	211	1
TGCAGCGGACCCATTGCCAGGGGCATTACTGAGAA	7	113	1
   AGTTGAACCATGGCCCAGGTTTGGTTTTTCTC	13	7	1
TCAACTAAATCAATCGCCTAGGGCAGGGAAATCTG	15	149	1
CTAACCAACACTCTCCCCAGGGGAAAGAAAACTTG	15	215	0
CAAGCATCCTCTCTTACCATGGGGTCATAACATTA	16	129	1
AACCTTAAAACTATTGCCATGGGCAGGGTAAATTG	17	10	1
TATCCCTAGGCGATCGCCGGGGGCAAAGCTCAATG	17	137	0
ATCCGGTAAACCATGGCCATGCATAAGCACGGCAA	25	61	0
          * ** ***  *** *
MAP Score: 25.9167

Motif 4
ATAATGGCTCTTTGCCCACCCCCACCCTAGTT	0	92	0
TGATGTCAAATTTCCCTAGCCCTCCTCCATAA	0	184	0
CCCGACCGTAATGACCCTGCCTTTCGCCGTTT	2	29	1
ATTGCCGATTATTCCCCTGCCACTGGTAAGAG	2	224	1
        TTTTACCTCTCCCAAAGGCGATCG	4	61	0
TAGAAACAATATCCCCTACCCTAGCTAGGGAT	5	97	0
AGATTGTCTTTTGACTTTGCCTGGACCGCCTC	6	58	0
CACTGTTTTTTATTCTTTCCCCAGCTTTTACG	6	158	1
CAAGTTGTGCTTATTTCTGCCCATCTCTACGG	7	83	0
GTGGCCAAGATTTTTTCACCCCCTTGAACAAT	8	11	1
AAAGGTTTGCTTACCGTTGCCCGTTTGACTAG	11	96	1
AGCCCAAAAAGTTACTCTGCCTCCAAATCATT	12	43	1
AACGGCAGAAATTTCCCTCCCTAGGGAGACTT	14	24	0
AGGAAAAATTTTTGATCTCCCCCCTGCTTACC	14	111	1
TTTACTTCAGATTTCCCTGCCCTAGGCGATTG	15	159	0
TGTAGCCAAGTTTTCTTTCCCCTGGGGAGAGT	15	209	1
TAAATATCCAATTTCCCAGCCCCATTTTTGTA	16	10	0
         AATAACCTTCCCCCTCGGGCGGA	16	169	0
AAAAAATCAATTTACCCTGCCCATGGCAATAG	17	20	0
TTGATAACATTGAGCTTTGCCCCCGGCGATCG	17	130	1
TGGATTGACATTGTTTTTGCCCCCCTAAGTCA	17	211	1
      GTTCGGTTCTTTGCCCTCCGGTTTTT	19	4	1
AGATTAATACTTAATTTTCCCTGCTGTTTTAA	23	39	1
CACTATAGACTTTCCTCTTCCC          	25	0	0
          **  ********
MAP Score: 21.6224

Motif 5
TCTTATTTGGAGCCATTGCCTGGGGAATAAAAA	0	56	1
GCCGATTCTTGACAAGTGCCCAGTCAAATGGGT	0	148	0
GCCTCTTATGGAGGAGGGCTAGGGAAATTTGAC	0	179	1
TTCCGAAGTAGGGGTTAGCTGGGGTAATGGCGG	1	20	1
CTGGGGTAATGGCGGTAGGCAAGAAACTTTCTC	1	38	1
TCCGTTGATTTGCCGGGGCAGGGTTGGTTAGGC	1	205	0
TCATCCAAACGGCGAAAGGCAGGGTCATTACGG	2	34	0
GTTATGAACAAACCATAGGCCAGAGTTAATCGC	2	104	0
CCTTAACTCTTACCAGTGGCAGGGGAATAATCG	2	229	0
CTCTCCCAAAGGCGATCGCCGATTATTTCAGAG	4	46	0
ACTTTTTATCGGCGATCGCCAAACTAAAGTTTA	5	39	0
CAATATCCCCTACCCTAGCTAGGGATGATTAAG	5	90	0
CTGGTGATGTGGGGAATGGCTGGTCCGAGAGAA	5	141	1
TACACGGCGGGACAAAAGCCCGGGAGACTTTAA	5	209	1
AGACTTTAATGACCAGTGCTTAGGTGTTGTCAT	5	233	1
TTTGTGAAGTGGCCATGGCAATGCAATTCCTGA	6	123	1
AGTAGATAAAGACAACGGCTGGGCTATGTGGAA	7	33	0
          GGCGATCGCTAGGTGAATGGTCG	7	250	0
CTAGTCAAACGGGCAACGGTAAGCAAACCTTTT	11	95	0
     AGTTGAACCATGGCCCAGGTTTGGTTTT	13	5	1
        GGGAGGAAAGGAAGGAGGAATTGGC	13	62	0
TTAAAACTATTGCCATGGGCAGGGTAAATTGAT	17	14	1
TTTATCCCTAGGCGATCGCCGGGGGCAAAGCTC	17	141	0
      GGCCAACCAGAGCAAGGATTTTTTTTG	18	4	1
CGCATTGTTCTGGGATTGCCCTGTCTGGAAAAT	20	105	1
CAATCCGGTAAACCATGGCCATGCATAAGCACG	25	65	0
          *****  *** **
MAP Score: 19.2795

Motif 6
AAAATTATCCTTACTACCCATTTGACTGGGCACTTG	0	133	1
AAATTTTCAGTAACAGTTCGTTTCGCCCAAATTAGA	0	238	0
TAAGCCTCACTATCAGATAATTTCAGCGTTCTGAGA	1	67	0
CAATGCTTTGTCGCAAGGGCTTTTAGTCGCTGAGAA	1	126	0
GCTGTCCATGTGGCAGTATTTTTAGCGATTAACTCT	2	80	1
CCAAAGGCGATCGCCGATTATTTCAGAGCCATCAAT	4	38	0
AGGGTTCCGATTCCTGGTGATGTGGGGAATGGCTGG	5	128	1
AATTTTAGCTTGACCGCAACTTTGACAGATTGTCTT	6	80	0
GCATTTAAACTGACAGGCAGTTTTGCTCCCCGGAGC	7	202	1
        GGTGGCCAAGATTTTTTCACCCCCTTGA	8	2	1
GGCTGACCAATTGCAAAAGTTTTAACTGGGCAGAAC	8	90	0
     GTTCTTGGCCGTAACTGTTACATCCTGCAAC	9	5	1
GGACAAAAAATGGCAGTTAGTTTAACCGCAACGGCA	14	49	0
ACCCTGCCCATGGCAATAGTTTTAAGGTT       	17	3	0
TGATCCCATTTTCCAGTCTTTTTGACTTCCATTCAG	17	61	1
AGGATAATTTTTGCAGTTTTTTTATGGAGTTTTGAT	17	99	1
AATCCCTTACTCCCCAGCAATTTCAGCTTATTTTGA	17	260	1
CTCCGGTTTTTTCCTGAAATTGTTACATTGTGTTTA	19	25	1
TTTCTTAATTTAGCTGAATATTTGAGGTTTTTGACT	22	33	1
     GGCCCTGCCCAACTTTGTTACCCTAAACAAG	23	5	1
TACTTAATTTTCCCTGCTGTTTTAACTATTCC    	23	46	1
  TTGTGGCATAGCAGGTTATTTAACAGTATTAATG	24	8	1
          * ****    *** **
MAP Score: 18.7074

Motif 7
TTGACATTGTTTTTGCCCCCCTAAGTCAGCA	17	215	1
TGACAGGCAGTTTTGCTCCCCGGAGCTAAAA	7	212	1
ATTCCTCCTTCCTTTCCTCCC          	13	66	1
ATAATGGCTCTTTGCCCACCCCCACCCTAGT	0	93	0
GTTGAAAATCCCTTACTCCCCAGCAATTTCA	17	254	1
AACGGCAGAAATTTCCCTCCCTAGGGAGACT	14	25	0
CCATGGGAGCTTTAACCCCCCTATTCTAGAT	25	99	0
GTGGCCAAGATTTTTTCACCCCCTTGAACAA	8	11	1
CTAGTTCGTTTTTTATTCCCCAGGCAATGGC	0	67	0
CTCCCGGGCTTTTGTCCCGCCGTGTAGCTAG	5	204	0
AAAAAATTATCCTTACTACCCATTTGACTGG	0	131	1
CATCAATTAGCTTTTTTTCCC          	5	0	0
AGGAAAAATTTTTGATCTCCCCCCTGCTTAC	14	111	1
TAACATTGAGCTTTGCCCCCGGCGATCGCCT	17	134	1
CCCTGCCCAACTTTGTTACCCTAAACAAGAT	23	12	1
TGTAGCCAAGTTTTCTTTCCCCTGGGGAGAG	15	209	1
  GTTCGGTTCTTTGCCCTCCGGTTTTTTCC	19	8	1
TTTACTTCAGATTTCCCTGCCCTAGGCGATT	15	160	0
TAAATATCCAATTTCCCAGCCCCATTTTTGT	16	11	0
AAAAAATCAATTTACCCTGCCCATGGCAATA	17	21	0
TGATCTCCCCCCTGCTTACCCTTTCTTTTGA	14	123	1
GAGAAAGTTTCTTGCCTACCGCCATTACCCC	1	40	0
AACTTTTGCAATTGGTCAGCCCGACCCTGCC	8	105	1
          TTTTACCTCTCCCAAAGGCGA	4	64	0
     AATAACCTTCCCCCTCGGGCGGAAAT	16	166	0
TCTAATTTATATTTTCTTCCGTTGATTTGCC	1	224	0
          **** ******
MAP Score: 15.5558

Motif 8
GGAGCCATTGCCTGGGGAATAAAAAACGAACTAGGG	0	64	1
AAACGAACTAGGGTGGGGGTGGGCAAAGAGCCATTA	0	87	1
GCCTCTTATGGAGGAGGGCTAGGGAAATTTGACATC	0	179	1
TTGCGACAAAGCATTGAGAGAGATACAGAACTTTTG	1	146	1
TGATTTGCCGGGGCAGGGTTGGTTAGGCCGATGTTA	1	197	0
CTTGGCAGTAACAGTGGACAAGTTAATAAAAAATTT	3	29	0
TCGGCGATCGCCTTTGGGAGAGGTAAAA        	4	57	1
CCCCTACCCTAGCTAGGGATGATTAAGTTAACTGTG	5	81	0
   CGTAAAAGCTGGGGAAAGAATAAAAAACAGTGG	6	157	0
TCTCTACGGGCGGAAGGGTTAGATAAAGTAGATAAA	7	56	0
ACCCTTCCGCCCGTAGAGATGGGCAGAAATAAGCAC	7	73	1
ATGGGTTTTAGCTCCGGGGAGCAAAACTGCCTGTCA	7	212	0
ATCCATTGTTCAAGGGGGTGAAAAAATCTTGGCCAC	8	11	0
ACCCCCTTGAACAATGGATTAAGCAATCATTTTGGA	8	28	1
     CGGCAGGGTCGGGCTGACCAATTGCAAAAGT	8	106	0
      GGGAGGAAAGGAAGGAGGAATTGGCAAATA	13	57	0
AAATTTCCCTCCCTAGGGAGACTTAAAGATTTTTAT	14	12	0
GAAAGGGTAAGCAGGGGGGAGATCAAAAATTTTTCC	14	112	0
ACATGTAGTTGCGTGGAGGTGAGCAATACACTTAAG	15	84	0
TAAATCAATCGCCTAGGGCAGGGAAATCTGAAGTAA	15	154	1
CAACACTCTCCCCAGGGGAAAGAAAACTTGGCTACA	15	209	0
ATAACCTTCCCCCTCGGGCGGAAATATTAATGTTAT	16	155	0
TAAAACTATTGCCATGGGCAGGGTAAATTGATTTTT	17	15	1
CTAGGCGATCGCCGGGGGCAAAGCTCAATGTTATCA	17	131	0
CCCGGCGATCGCCTAGGGATAAACAATAAACGTGTG	17	151	1
GTCATTGCTGACTTAGGGGGGCAAAAACAATGTCAA	17	215	0
GGGATTGATTCCGATGGGATAAACACAATGTAACAA	19	44	0
CCAGAACAATGCGGCGGAAAACCAAAACTTAGAAGC	20	82	0
ATAGTTAAAACAGCAGGGAAAATTAAGTATTAATCT	23	39	0
ATTGAATCTAGAATAGGGGGGTTAAAGCTCCCATGG	25	94	1
          **   *** ***  **
MAP Score: 15.1004

Motif 9
GAATCAGTTCGCCAAGTTTTAGCC        	0	286	1
GATTTGCCGGGGCAGGGTTGGTTAGGCCGATG	1	200	0
CTGTCCATGTGGCAGTATTTTTAGCGATTAAC	2	81	1
CAAACCATAGGCCAGAGTTAATCGCTAAAAAT	2	97	0
ATAACTCCTGGGCAGATTTTGTTGTTTAGCTA	5	268	1
TTAGCTTGACCGCAACTTTGACAGATTGTCTT	6	80	0
CACAAACCTAGCCAATTTTAGCTTGACCGCAA	6	97	0
TTATTCTTTCCCCAGCTTTTACG         	6	167	1
TAAACTGACAGGCAGTTTTGCTCCCCGGAGCT	7	207	1
      GGTGGCCAAGATTTTTTCACCCCCTT	8	4	1
TCCTAAAATGGGCAACTTTGCTTATATCTTAT	10	14	0
TGAACCATGGCCCAGGTTTGGTTTTTCTCAAA	13	13	1
TAAACTAACTGCCATTTTTTGTCCAGTTGGGG	14	61	1
TGATGCTGTAGCCAAGTTTTCTTTCCCCTGGG	15	203	1
ATGGTGGAGACCCAGGTTTGTCTTTTCTGGCT	16	50	0
CTAAAGAATAGCTAGATTTTGCTTCTAAGTTT	20	62	1
AAATGAACTACCCAGAGTTAATCAT       	20	134	1
   GGCCCTGCCCAACTTTGTTACCCTAAACA	23	7	1
AGTCTATAGTGGCAGAGTTTCCGGTGAGCTTG	25	21	1
CTTATGCATGGCCATGGTTTACCGGATTGAAT	25	69	1
          ***** **** *
MAP Score: 12.535

Motif 10
TGAATAATGGCTCTTTGCCCACCCCCACCC	0	97	0
AGTAACAGTTCGTTTCGCCCAAATTAGAGG	0	236	0
AAGTTTCTTGCCTACCGCCATTACCCCAGC	1	37	0
GAGATACAGAACTTTTGCCCATAAATAAAT	1	165	1
GTTATTGCCGATTATTCCCCTGCCACTGGT	2	221	1
CTTGTCCACTGTTACTGCCAAGAAACT   	3	43	1
AACTTGACTAATTATTGCCAAATTGATGGC	4	17	1
      TTTTACCTCTCCCAAAGGCGATCG	4	61	0
TCTCGGACCAGCCATTCCCCACATCACCAG	5	141	0
CTTTGTAAAGATTTTTGCCACTAGCTACAC	5	184	1
TTTATCTAACCCTTCCGCCCGTAGAGATGG	7	65	1
AGTTGTGCTTATTTCTGCCCATCTCTACGG	7	83	0
TTGCAGCGGACCCATTGCCAGGGGCATTAC	7	112	1
ACTGACAGGCAGTTTTGCTCCCCGGAGCTA	7	210	1
TTTGCTCTCAGGTTCTGCCCAGTTAAAACT	8	79	1
AGGGAGGGAAATTTCTGCCGTTGCGGTTAA	14	34	1
ATTTTAAGCGAGTATTCCCCAACTGGACAA	14	79	0
AAAATTTTTGATCTCCCCCCTGCTTACCCT	14	115	1
ATGGGAAGCAATTACTCCCATGATAGCCAC	15	17	1
TAACATTAATATTTCCGCCCGAGGGGGAAG	16	156	1
 AACCTTAAAACTATTGCCATGGGCAGGGT	17	9	1
GATTGACATTGTTTTTGCCCCCCTAAGTCA	17	213	1
TTGAAAATCCCTTACTCCCCAGCAATTTCA	17	255	1
          **********
MAP Score: 10.2227

Motif 11
TTATTTGGAGCCATTGCCTGGGGAATAAAAAAC	0	58	1
CCTTACTACCCATTTGACTGGGCACTTGTCAAG	0	141	1
GTATTTTTAGCGATTAACTCTGGCCTATGGTTT	2	95	1
CTCTTTCGGGCATCTGGCTAGGGGGTTTGCTTT	2	168	1
GCCGATTATTCCCCTGCCACTGGTAAGAGTTAA	2	227	1
AATTTAGTCTCGGTGGGTTAGGGC         	3	1	0
AAATAATCGGCGATCGCCTTTGGGAGAGGTAAA	4	51	1
AATATCCCCTACCCTAGCTAGGGATGATTAAGT	5	89	0
TAGGTTTGTGAAGTGGCCATGGCAATGCAATTC	6	119	1
TGCAGCGGACCCATTGCCAGGGGCATTACTGAG	7	113	1
GGACGATAATCTTTTACCTTTGCTCTCAGGTTC	8	61	1
GGCCTGGACAATTTTCGCTATGGTTTAAAAGGT	11	69	1
AAAATCTTTAAGTCTCCCTAGGGAGGGAAATTT	14	15	1
CGATTGATTTAGTTGAGATCGGGAAAATTTGGT	15	132	0
TCAACTAAATCAATCGCCTAGGGCAGGGAAATC	15	149	1
GCCAAGTTTTCTTTCCCCTGGGGAGAGTGTTGG	15	213	1
CAAGCATCCTCTCTTACCATGGGGTCATAACAT	16	129	1
    AATAACCTTCCCCCTCGGGCGGAAATATT	16	163	0
AACCTTAAAACTATTGCCATGGGCAGGGTAAAT	17	10	1
GTTTTGATAACATTGAGCTTTGCCCCCGGCGAT	17	127	1
TTGCCCCCGGCGATCGCCTAGGGATAAACAATA	17	146	1
  GTTCGGTTCTTTGCCCTCCGGTTTTTTCCTG	19	8	1
CTAGTAATGGAACTCGATTTGGGATTGATTCCG	19	67	0
TGGATCTCCTCTTCTAGTAATGGAACTCGATTT	19	80	0
    ATGGTTAGTTGAGCTATGGGTATTAGTCG	21	16	0
GCAGAGTTTCCGGTGAGCTTGAGCTCTGTTTGC	25	32	1
          *  ****** ***
MAP Score: 9.83396

Motif 12
TGCAAGTTGTGCTTATTTCTGCCCATCTCT	7	87	0
GTAAGAACTCGCTAATTTCTTAATTTAGCT	22	18	1
GGCGATCGCCGATTATTTCAGAGCCATCAA	4	39	0
     TGGCAGCTAATCTCTTTGTTGCAGG	9	33	0
GGGTAGTAAGGATAATTTTTTGAACTGAAT	0	122	0
ATTCAGTCAGGATAATTTTTGCAGTTTTTT	17	91	1
CTTATTTTGAGCTTATTTTTCAGT      	17	286	1
AGGGTAAATTGATTTTTTCTTGTTGTTTGA	17	34	1
CTCACTATCAGATAATTTCAGCGTTCTGAG	1	68	0
        ATGATTAACTCTGGGTAGTTCA	20	137	0
TATTTTTAGCGATTAACTCTGGCCTATGGT	2	96	1
CATTTTGGACGATAATCTTTTACCTTTGCT	8	55	1
GATTTTTTTTGATTAATTTTTCGGAGGTTA	18	26	1
CCAGAGCAAGGATTTTTTTTGATTAATTTT	18	16	1
 GGTGGCCAAGATTTTTTCACCCCCTTGAA	8	9	1
AGCTCCCATGGATAAATTCAGCATAGTTT 	25	119	1
GGGCAACTTTGCTTATATCTTATCGGC   	10	7	0
GCAAAATCTAGCTATTCTTTAGGGTGCCTG	20	54	0
          **********
MAP Score: 8.19205

Motif 13
AACGAACTAGGGTGGGGGTGGGCAAAGAGCCA	0	88	1
CTCTTATGGAGGAGGGCTAGGGAAATTTGACA	0	181	1
ATATTCCGAAGTAGGGGTTAGCTGGGGTAATG	1	17	1
TATCTGATAGTGAGGCTTAGGGAGTTCAAAAT	1	84	1
GCCGGGGCAGGGTTGGTTAGGCCGATGTTAGA	1	195	0
ATTTAGTCTCGGTGGGTTAGGGC         	3	1	0
ATCATCCCTAGCTAGGGTAGGGGATATTGTTT	5	94	1
TCCGATTCCTGGTGATGTGGGGAATGGCTGGT	5	133	1
TATTATGGGAGGCGGTCCAGGCAAAGTCAAAA	6	50	1
AAAGACAACGGCTGGGCTATGTGGAAGACTTG	7	27	0
CCTTCCGCCCGTAGAGATGGGCAGAAATAAGC	7	75	1
TAGGTGAATGGTCGAGATGGGTTTTAGCTCCG	7	232	0
        CGGCAGGGTCGGGCTGACCAATTG	8	113	0
AGACCCCATTGTTGAGATAGGCCCGTAGAACG	11	13	0
AGGAAAGGAAGGAGGAATTGGCAAATAAGTCA	13	52	0
CAAAAGAAAGGGTAAGCAGGGGGGAGATCAAA	14	121	0
ATGTAGTTGCGTGGAGGTGAGCAATACACTTA	15	86	0
GATTGATTTAGTTGAGATCGGGAAAATTTGGT	15	132	0
CTCTGTCATTGCTGACTTAGGGGGGCAAAAAC	17	223	0
TGAAATTGCTGGGGAGTAAGGGATTTTCAACT	17	253	0
AGTTCTATGAGGTGGGATCTGTCCAGATCAAA	20	15	1
   ATGGTTAGTTGAGCTATGGGTATTAGTCG	21	16	0
GGGTAACAAAGTTGGGCAGGGCC         	23	1	0
          ****** * ***
MAP Score: 4.44067

Motif 14
AAACGAACTAGGGTGGGGGTGGGCAAAGAGCCATTA	0	87	1
TTCCGAAGTAGGGGTTAGCTGGGGTAATGGCGGTAG	1	20	1
TCCGTTGATTTGCCGGGGCAGGGTTGGTTAGGCCGA	1	202	0
CATCCAAACGGCGAAAGGCAGGGTCATTACGGTCGG	2	30	0
AAGAGTTAAGGGCTTTAGCTAGACTGAACCAAATAT	2	251	1
TGGTGATGTGGGGAATGGCTGGTCCGAGAGAAACAG	5	142	1
TACACGGCGGGACAAAAGCCCGGGAGACTTTAATGA	5	209	1
TTTGTGAAGTGGCCATGGCAATGCAATTCCTGAACC	6	123	1
AGTAGATAAAGACAACGGCTGGGCTATGTGGAAGAC	7	30	0
          GGCGATCGCTAGGTGAATGGTCGAGA	7	247	0
CCCCATTGTTGAGATAGGCCCGTAGAACGTCC    	11	6	0
CGTAAGTATAGCGATTAGTCCGAGCAATATTAATGA	12	70	0
ATCAAAAGAAAGGGTAAGCAGGGGGGAGATCAAAAA	14	119	0
TAAATCAATCGCCTAGGGCAGGGAAATCTGAAGTAA	15	154	1
TAAAACTATTGCCATGGGCAGGGTAAATTGATTTTT	17	15	1
TTTATCCCTAGGCGATCGCCGGGGGCAAAGCTCAAT	17	138	0
          ***   *** ***  *
MAP Score: 2.95799

Motif 15
GAACTAGGGTGGGGGTGGGCAAAGAGCCATTA	0	91	1
GGCCTCTTATGGAGGAGGGCTAGGGAAATTTG	0	178	1
CTGGGGTAATGGCGGTAGGCAAGAAACTTTCT	1	38	1
TTGATTTGCCGGGGCAGGGTTGGTTAGGCCGA	1	202	0
TCATCCAAACGGCGAAAGGCAGGGTCATTACG	2	35	0
CTGGTGATGTGGGGAATGGCTGGTCCGAGAGA	5	141	1
CTAGCTACACGGCGGGACAAAAGCCCGGGAGA	5	204	1
AGGTATTATGGGAGGCGGTCCAGGCAAAGTCA	6	47	1
CGTAAAAGCTGGGGAAAGAATAAAAAACAGTG	6	158	0
TTAGCTCCGGGGAGCAAAACTGCCTGTCAGTT	7	209	0
CATTGTTCAAGGGGGTGAAAAAATCTTGGCCA	8	12	0
   CGGTCATGGTGAAAGAAAGTATATTTTCA	12	7	1
TTAATGATTTGGAGGCAGAGTAACTTTTTGGG	12	45	0
GGGTAAGCAGGGGGGAGATCAAAAATTTTTCC	14	112	0
GTAGTTGCGTGGAGGTGAGCAATACACTTAAG	15	84	0
ACTCTCCCCAGGGGAAAGAAAACTTGGCTACA	15	209	0
 TACAAAAATGGGGCTGGGAAATTGGATATTT	16	9	1
TTTAATCAATGGAGCCAGAAAAGACAAACCTG	16	38	1
TTCCGCCCGAGGGGGAAGGTTATT        	16	168	1
CTGACTTAGGGGGGCAAAAACAATGTCAATCC	17	212	0
GATTCCGATGGGATAAACACAATGTAACAATT	19	42	0
AGAACAATGCGGCGGAAAACCAAAACTTAGAA	20	84	0
          ** ** ******
MAP Score: 2.13369

Motif 16
GTTCGTTTTTTATTCCCCAGGCAATGGCTCCA	0	63	0
GGCTCTTTGCCCACCCCCACCCTAGTTCGTTT	0	87	0
TGATGTCAAATTTCCCTAGCCCTCCTCCATAA	0	184	0
ATCGGCCTAACCAACCCTGCCCCGGCAAATCA	1	201	1
CCGTAATGACCCTGCCTTTCGCCGTTTGGATG	2	34	1
TATTGCCGATTATTCCCCTGCCACTGGTAAGA	2	223	1
         TTTTACCTCTCCCAAAGGCGATC	4	62	0
CTAGAAACAATATCCCCTACCCTAGCTAGGGA	5	98	0
TCTCCCGGGCTTTTGTCCCGCCGTGTAGCTAG	5	204	0
GTTTTTTATTCTTTCCCCAGCTTTTACG    	6	162	1
ACGATAATCTTTTACCTTTGCTCTCAGGTTCT	8	63	1
AAAAGGTTTGCTTACCGTTGCCCGTTTGACTA	11	95	1
GCCAATTCCTCCTTCCTTTCCTCCC       	13	62	1
GAGGGAAATTTCTGCCGTTGCGGTTAAACTAA	14	37	1
AAATTTTTGATCTCCCCCCTGCTTACCCTTTC	14	116	1
TTCAGATTTCCCTGCCCTAGGCGATTGATTTA	15	154	0
TGTAGCCAAGTTTTCTTTCCCCTGGGGAGAGT	15	209	1
    AATAACCTTCCCCCTCGGGCGGAAATAT	16	164	0
AAAAAATCAATTTACCCTGCCCATGGCAATAG	17	20	0
TAACATTGAGCTTTGCCCCCGGCGATCGCCTA	17	134	1
TTGACATTGTTTTTGCCCCCCTAAGTCAGCAA	17	215	1
  GTTCGGTTCTTTGCCCTCCGGTTTTTTCCT	19	8	1
CACTATAGACTTTCCTCTTCCC          	25	0	0
          *** **** ***
MAP Score: 1.41483