AlignACE 3.0 10/20/99 AlignACE2 -i CY/CY_operons022_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944249949 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 argD 123 N-acetylornithine aminotransferase #1 argB 263 N-acetylglutamate kinase #2 hypothetical 120 hypothetical protein #3 bioB 73 biotin synthetase #4 hemC 76 porphobilinogen deaminase #5 hypothetical 38 hypothetical protein #6 hemA 25 transfer RNA-Gln reductase #7 hemB 300 porphobilinogen synthase #8 argJ 107 ornithine acetyltransferase #9 hypothetical 30 hypothetical protein #10 ndkR 300 nucleoside diphosphate kinase #11 hemL 300 glutamate-1-semialdehyde 2,1- aminomutase #12 bioF 161 7-keto-8-aminopelargonic acid synthetase #13 argC 245 N-acetyl-gamma-glutamyl-phosphate reductase #14 hypothetical 170 hypothetical protein Motif 1 AACCCTTCCGCCCGTAGAGATGGGCAGAAATAA 1 72 1 CTCAGTAATGCCCCTGGCAATGGGTCCGCTGCA 1 113 0 CTCGACCATTCACCTAGCGATCGCC 1 248 1 GGAAAACCGTTGAAATGGGCGGTTAAAG 2 5 1 TCATTTTTTTCCCCCGGCGATCGCCT 2 104 1 GCCCCGGCGGGATGGACCCTTGATT 6 2 1 TAGTTTTTGCCCCCAAGAACTGGTTAAGGTGCC 7 175 0 TCGCCTTTGTCCCTTGGCGATGGGA 8 2 0 GGGGAAAACCACCCTGGCGATCGCTGTTCCAGA 10 173 0 GGGTGGTTTTCCCCTATCGATGGGGGCTGGTTA 10 192 1 TTTACCCCCATGTCATGGCAGATTACTG 14 5 1 **** * ***** MAP Score: 24.8897 Motif 2 TCAATAAATTCCCATAGCCAGTCTTTACACCCTA 11 198 1 CCAGGCTTTTCCCCAGGGCTGACCGAATTCTGCT 7 121 1 CTCTCCTGGCACCTCTGCCCACCGTGATAAAATG 3 11 1 ATCAAAATTGCCCAATGGCGAACTTGATCCCCGG 13 158 0 TCCCATCGCCAAGGGACAAAGGCGA 8 1 1 AGAAGGAAAACCAAGGCCGATAGCCTCTGATGC 4 9 1 TTGCAGCGGACCCATTGCCAGGGGCATTACTGAG 1 112 1 CAAATGGTAATCCCGAGCCAAACCTAGGAATGCT 12 37 1 ACTAACTAATCCCTAAGGCTGAACTTTTACTTTA 7 232 1 CATTCATAATCCCGATGCCCAAACCATGTAAAAT 10 226 1 ATGAATGGTAACCAGCCCCCATCGATAGGGGAAA 10 199 0 AGAGGGGTGACCCTACCCCTGCAGACCATATCCA 0 66 1 TCTGCTTCAAACCATTGCCGGAATTTGGCACCTT 7 149 1 AAGCCTGGCAACCCAACCCAGACCAGTTCTCAGT 7 95 0 ATCATTTTTTTCCCCCGGCGATCGCCT 2 103 1 AATTTATTGAACCTGTGCCCACATCAAAAAAACA 11 174 0 TCAAGTCTTCCACATAGCCCAGCCGTTGTCTTTA 1 26 1 GAAAGTGGTGCCCATTGTCAAGCTTTTTACCAAA 10 109 1 AGGGGAAAACCACCCTGGCGATCGCTGTTCCAGA 10 173 0 TTTCCGGGATCCTTCTGCCCAGAGATATTGCTAG 13 110 0 TGATCCAGACCCCTAACCCCATATTGCC 3 55 1 GTTGACCGCTCCCCAGGACGGACTAGCAATATCT 13 88 1 ATCGGACCTAACCCCCGTCTAGCCATTGTACGCA 13 52 1 TTTATCTAACCCTTCCGCCCGTAGAGATGGGCAG 1 65 1 CAATAATTAACCCCGAGCAGAACTGCTATGATTG 8 67 1 GAATACTGTGACTCGGGGCTATAGCTCAGTTGGT 10 66 0 TTCTGGCTTAAACTGAGGCTGACCATCATTTTTT 2 79 1 **** *** * ** MAP Score: 24.1719 Motif 3 CTGACCATCATTTTTTTCCCCCGGCGATCGC 2 97 1 TGGGTTGCCAGGCTTTTCCCCAGGGCTGACC 7 114 1 ATCCTTGATCTTCTTTTCCCCTAGGGTTCTG 10 146 1 TCTTCCCAGTTTTTGCTCCCC 14 159 1 TGACAGGCAGTTTTGCTCCCCGGAGCTAAAA 1 212 1 AAGTTGTGCTTATTTCTGCCCATCTCTACGG 1 83 0 CTACTTTGCGTCTTTTTTCCC 13 0 0 CTGTAGAGTGGAGTTCTCCCCGTCTGTTTTT 11 150 1 TTTTCCGGGATCCTTCTGCCCAGAGATATTG 13 114 0 ATCGCCAGGGTGGTTTTCCCCTATCGATGGG 10 185 1 GTTTAGCAAAGATTTTTTCCGGGATCCTTCT 13 128 0 AATCAGAAGAGATTTTTGCCGCCGCTCAACA 11 275 1 GGCAGATTACTGGTGTTTCCCTTAGTCGGGT 14 26 1 CTCCAATAAATTTCTCTTCCCAGTTTTTGCT 14 145 1 AAAACCCTGGGTTTGCTTCCGGGCACCCGAC 14 50 0 CTAATTGACTAGTTTTTGCCCCCAAGAACTG 7 186 0 ACGCAAAGTTGACCGCTCCCCAGGACGGACT 13 81 1 GCTGATTTTCGCCTTTGTCCCTTGGCGATGG 8 12 0 TTATATTGCTGTTTTTACCGGGGTCACCCT 7 9 1 * ********* MAP Score: 21.2561 Motif 4 GCAGCGGACCCATTGCCAGGGGCATTACTGA 1 114 1 AGGCAGTTTTGCTCCCCGGAGCTAAAACCCA 1 216 1 GCCCCCACATTATAACCAAGGGATCTTTTCC 2 43 1 GTTTAAGCCAGAAACCCAGGAAAAGATCCCT 2 61 0 AGGCGATCGCCGGGGGAAAAAAATG 2 105 0 AGAAGGAAAACCAAGGCCGATAGCCT 4 5 1 CAAGGGTCCATCCCGCCGGGGC 6 1 0 ATATTGCTGTTTTTACCGGGGTCACCCTTGG 7 12 1 AGACCGTAAAGCAGACCAAGGGTGACCCCGG 7 27 0 TTGCCAGGCTTTTCCCCAGGGCTGACCGAAT 7 118 1 TGCTTCAAACCATTGCCGGAATTTGGCACCT 7 151 1 TCCCATCGCCAAGGGACAAAGGCG 8 3 1 ATCAGCAATTCCTGACCGGGGTTGAAGGACC 8 37 1 TCATAGCAGTTCTGCTCGGGGTTAATTATTG 8 67 0 CTGGAACAGCGATCGCCAGGGTGGTTTTCCC 10 174 1 TTGCCCAAACTCTCACCAAGGACTCTAGGTT 11 75 1 AGTCTCTACACCTTCCCAGAAACACCAAGCA 12 67 0 GCGTACAATGGCTAGACGGGGGTTAGGTCCG 13 54 0 AAAGTTGACCGCTCCCCAGGACGGACTAGCA 13 85 1 CCGGGATCCTTCTGCCCAGAGATATTGCTAG 13 110 0 AAAATCTTTGCTAAACCGGGGATCAAGTTCG 13 143 1 TGCCCGGAAGCAAACCCAGGGTTTTCGATCC 14 56 1 *** ******* MAP Score: 20.3828 Motif 5 GCAAAGTTGACCGCTCCCCAGGACGGACTAGC 13 83 1 GATGATCGGACCTAACCCCCGTCTAGCCATTG 13 48 1 GGTTGCCAGGCTTTTCCCCAGGGCTGACCGAA 7 116 1 TTTATCTAACCCTTCCGCCCGTAGAGATGGGC 1 65 1 CAATGGCGAACTTGATCCCCGGTTTAGCAAAG 13 148 0 ATTATTGGTCCTTCAACCCCGGTCAGGAATTG 8 42 0 TTGCAGCGGACCCATTGCCAGGGGCATTACTG 1 112 1 GACCATCATTTTTTTCCCCCGGCGATCGCCT 2 99 1 TTTCCCTTAGTCGGGTGCCCGGAAGCAAACCC 14 41 1 TTTCCGGGATCCTTCTGCCCAGAGATATTGCT 13 112 0 TCCCATCGCCAAGGGACAAAGGC 8 1 1 GACAGGCAGTTTTGCTCCCCGGAGCTAAAACC 1 213 1 TCAATAAATTCCCATAGCCAGTCTTTACACCC 11 198 1 TTCTGGAACAGCGATCGCCAGGGTGGTTTTCC 10 172 1 GGCCAAGACTCTGAGAGCCCGTTTTAAACGCC 11 15 0 CCAATAAATTTCTCTTCCCAGTTTTTGCTCCC 14 147 1 TGATCCAGACCCCTAACCCCATATTGCC 3 55 1 CAGTTTAAGCCAGAAACCCAGGAAAAGATCCC 2 62 0 TTGACTAGTTTTTGCCCCCAAGAACTGGTTAA 7 181 0 TCAAGTCTTCCACATAGCCCAGCCGTTGTCTT 1 26 1 *** ******* MAP Score: 20.1276 Motif 6 TGGTCGAGATGGGTTTTAGCTCCGGGGAGCAAAACT 1 220 0 TATTTCAGAGGGGTGACCCTACCCCTGCAGACCATA 0 60 1 ATGGCTAGACGGGGGTTAGGTCCGATCATCAATGGT 13 42 0 TTGCCCAATGGCGAACTTGATCCCCGGTTTAGCAAA 13 149 0 GGTTAATTATTGGTCCTTCAACCCCGGTCAGGAATT 8 43 0 AATCAAGGGTCCATCCCGCCGGGGC 6 2 0 ATGGAGCTAAGCGGGCTCGAACCGCTGACCCCTTGC 10 12 1 TCGAAAACCCTGGGTTTGCTTCCGGGCACCCGACTA 14 48 0 GTAATGCCCCTGGCAATGGGTCCGCTGCAAGTTGTG 1 106 0 GACGCGAATTGGTTAACGCAACCCCTTTTATTACCA 11 236 1 GGGGGGCTCCTAACGCGTTAGACTGGC 0 106 0 TCTACCAACTGAGCTATAGCCCCGAGTCACAGTATT 10 63 1 TTTTCCCCTAGGGTTCTGGAACAGCGATCGCCAGGG 10 159 1 GGGAAAAGCCTGGCAACCCAACCCAGACCAGTTCTC 7 98 0 ATTTTTTCCGGGATCCTTCTGCCCAGAGATATTGCT 13 112 0 GATTATGAATGGTAACCAGCCCCCATCGATAGGGGA 10 201 0 AATCAGAAGAGATTTTTGCCGCCGCTCAACATTTA 11 275 1 ATTCTGTAGAGTGGAGTTCTCCCCGTCTGTTTTTTT 11 147 1 TGCAAGTTGTGCTTATTTCTGCCCATCTCTACGGGC 1 81 0 AGCAAACCCAGGGTTTTCGATCCAATCATAGCGGAT 14 64 1 TGTACGCAAAGTTGACCGCTCCCCAGGACGGACTAG 13 78 1 TCTATTGTGCTGAAAGTGGTGCCCATTGTCAAGCTT 10 98 1 *** * * ***** MAP Score: 19.9091 Motif 7 GTCTGGGTTGGGTTGCCAGGCTTTTCCCCAGGGCTGACCGAA 7 106 1 AAATGGAGCTAAGCGGGCTCGAACCGCTGACCCCTTGCA 10 7 1 CATTTAAACTGACAGGCAGTTTTGCTCCCCGGAGCTAAAACC 1 203 1 AGGAATTGCTGATTTTCGCCTTTGTCCCTTGGCGATGGGA 8 8 0 TCTGCCCAGAGATATTGCTAGTCCGTCCTGGGGAGCGGTCAA 13 89 0 CAAAATTATCCTTGATCTTCTTTTCCCCTAGGGTTCTGGAAC 10 139 1 AACTGAGGCTGACCATCATTTTTTTCCCCCGGCGATCGCCT 2 89 1 AAGACGCAAAGTAGGACAGAGTTAGACCATTGATGATCGGAC 13 17 1 CCCTTAGTCGGGTGCCCGGAAGCAAACCCAGGGTTTTCGATC 14 44 1 CTTTCAAATGGTAATCCCGAGCCAAACCTAGGAATGCTTGGT 12 33 1 CAGGGCTGACCGAATTCTGCTTCAAACCATTGCCGGAATTTG 7 134 1 GATGATCGGACCTAACCCCCGTCTAGCCATTGTACGCAAAGT 13 48 1 TCCGCTGCAAGTTGTGCTTATTTCTGCCCATCTCTACGGGCG 1 80 0 TTCGATCCAATCATAGCGGATTCTTTCCTCGCCAATCTCTTT 14 79 1 TTATATTGCTGTTTTTACCGGGGTCACCCTTGG 7 1 1 CCGTTGTCTTTATCTACTTTATCTAACCCTTCCGCCCGTAGA 1 48 1 ACAGCTATAAATTGCCCAAACTCTCACCAAGGACTCTAGGTT 11 64 1 ACAGTCAAGTCTTCCACATAGCCCAGCCGTTGTCTTTATCTA 1 22 1 CAAAATTGCCCAATGGCGAACTTGATCCCCGGTTTAGCAAAG 13 148 0 CTCGGGGTTAATTATTGGTCCTTCAACCCCGGTCAGGAATTG 8 42 0 ATTGTGGCAAGATTCTCAGTAATGCCCCTGGCAATGGGTCCG 1 118 0 AATCAAGGGTCCATCCCGCCGGGGC 6 1 0 AACAGCGATCGCCAGGGTGGTTTTCCCCTATCGATGGGGGCT 10 178 1 GTCTGCGGTTTGTCAAGCTGATCTAACCCATCTTCAGGTTAA 7 54 1 CCCCTGCAGACCATATCCAAATTTGGCCAGTCTAACGCGTTA 0 81 1 * * * * ** ** ** MAP Score: 17.5277 Motif 8 GAGGGGTGACCCTACCCCTGCAGACCATATCCA 0 67 1 TTATCTAACCCTTCCGCCCGTAGAGATGGGCAG 1 66 1 TGCAGCGGACCCATTGCCAGGGGCATTACTGAG 1 113 1 ACAGGCAGTTTTGCTCCCCGGAGCTAAAACCCA 1 214 1 ACCATCATTTTTTTCCCCCGGCGATCGCCT 2 100 1 TCTCCTGGCACCTCTGCCCACCGTGATAAAATG 3 12 1 GCATCAGAGGCTATCGGCCTTGGTTTTCCTTCT 4 10 0 ATCAAGGGTCCATCCCGCCGGGGC 6 1 0 GGTTGCCAGGCTTTTCCCCAGGGCTGACCGAAT 7 116 1 CAAGCACTAACTAATCCCTAAGGCTGAACTTTT 7 227 1 TCCCATCGCCAAGGGACAAAGGCG 8 1 1 CCTTGATCTTCTTTTCCCCTAGGGTTCTGGAAC 10 148 1 TGAATGGTAACCAGCCCCCATCGATAGGGGAAA 10 199 0 ATTTATTGAACCTGTGCCCACATCAAAAAAACA 11 174 0 ATGATCGGACCTAACCCCCGTCTAGCCATTGTA 13 49 1 GCAAAGTTGACCGCTCCCCAGGACGGACTAGCA 13 83 1 TTCCGGGATCCTTCTGCCCAGAGATATTGCTAG 13 110 0 ** ****** ** MAP Score: 14.1643 Motif 9 TGCAGCGGACCCATTGCCAGGGGCATTACTGA 1 113 1 CCATCTCGACCATTCACCTAGCGATCGCC 1 244 1 ACCATCATTTTTTTCCCCCGGCGATCGCCT 2 100 1 TATATTGCTGTTTTTACCGGGGTCACCCTTGG 7 11 1 GTTGCCAGGCTTTTCCCCAGGGCTGACCGAAT 7 117 1 AAGCACTAACTAATCCCTAAGGCTGAACTTTT 7 228 1 TCCCATCGCCAAGGGACAAAGGCG 8 2 1 GGACCAATAATTAACCCCGAGCAGAACTGCTA 8 63 1 GCTCGAACCGCTGACCCCTTGCATGCCATGCA 10 26 1 CTTGATCTTCTTTTCCCCTAGGGTTCTGGAAC 10 149 1 GCCAGGGTGGTTTTCCCCTATCGATGGGGGCT 10 188 1 ATTGCCCAAACTCTCACCAAGGACTCTAGGTT 11 74 1 AGCCAGTCTTTACACCCTAAGGAGACGCGAAT 11 213 1 ATGATCGGACCTAACCCCCGTCTAGCCATTGT 13 49 1 CAAAGTTGACCGCTCCCCAGGACGGACTAGCA 13 84 1 TTTACCCCCATGTCATGGCAGA 14 0 1 ** ***** *** MAP Score: 5.21799 Motif 10 TTCCGCCCGTAGAGATGGGCAGAAATAAGCAC 1 77 1 AACCTCACTTAAAACAGGTCAGTCGATTTAAG 0 15 1 GACCATATCCAAATTTGGCCAGTCTAACGCGT 0 89 1 AGGTTAACTGAGAACTGGTCTGGGTTGGGTTG 7 89 1 AGGCAACGTCAAAACTGTTCAGGGCTAACAGT 1 167 0 GGGGAGCAAAAACTGGGAAGAGAAATTTAT 14 150 0 GGGGGAAAAAAATGATGGTCAGCCTCAGTTTA 2 87 0 AAAAAGACGCAAAGTAGGACAGAGTTAGACCA 13 14 1 GACTAGCAATATCTCTGGGCAGAAGGATCCCG 13 108 1 TTGGTCCTTCAACCCCGGTCAGGAATTGCTGA 8 38 0 *** **** *** MAP Score: 4.82334 Motif 11 ACAGGCAGTTTTGCTCCCCGGAGCTAAAACCCATCT 1 214 1 ACCATCATTTTTTTCCCCCGGCGATCGCCT 2 100 1 ATATTGCTGTTTTTACCGGGGTCACCCTTGGTCTGC 7 12 1 GTTGCCAGGCTTTTCCCCAGGGCTGACCGAATTCTG 7 117 1 TGACTAGTTTTTGCCCCCAAGAACTGGTTAAGGTGC 7 176 0 ATTTTCGCCTTTGTCCCTTGGCGATGGGA 8 3 0 GACCAATAATTAACCCCGAGCAGAACTGCTATGATT 8 64 1 CTCGAACCGCTGACCCCTTGCATGCCATGCAAGTGC 10 27 1 AACTGAGCTATAGCCCCGAGTCACAGTATTCTATTG 10 69 1 CTTGATCTTCTTTTCCCCTAGGGTTCTGGAACAGCG 10 149 1 GATAGGGGAAAACCACCCTGGCGATCGCTGTTCCAG 10 174 0 TTACCATTCATAATCCCGATGCCCAAACCATGTAAA 10 222 1 TTTCAAATGGTAATCCCGAGCCAAACCTAGGAATGC 12 34 1 TGATCGGACCTAACCCCCGTCTAGCCATTGTACGCA 13 50 1 ATGGCGAACTTGATCCCCGGTTTAGCAAAGATTTTT 13 142 0 TTTACCCCCATGTCATGGCAGATTACT 14 1 1 ** ***** ** * MAP Score: 3.68741 Motif 12 GACAGGCAGTTTTGCTCCCCGGAGCTAAAA 1 213 1 CTGACCATCATTTTTTTCCCCCGGCGATCG 2 97 1 AATTGACTAGTTTTTGCCCCCAAGAACTGG 7 185 0 GCCTAAATATTTTGCTTAATGGATTTTTTT 7 274 0 CCCATAACTTTTTGCTTAACCGCC 9 16 1 ATCCTTGATCTTCTTTTCCCCTAGGGTTCT 10 146 1 GATTGTTAAGTTTTTTTAACAGAAAAAGCA 10 267 1 ACGCAACCCCTTTTATTACCACTAAATCAG 11 251 1 GGTCTGGACTTTCTCTTCACCCTCAGCTTT 12 120 0 TACTTTGCGTCTTTTTTCCC 13 0 0 GGAAAAAATCTTTGCTAAACCGGGGATCAA 13 139 1 CAATGGCGAACTTGATCCCCGGTTTAGCAA 13 150 0 AAACCCTGGGTTTGCTTCCGGGCACCCGAC 14 50 0 TCCAATAAATTTCTCTTCCCAGTTTTTGCT 14 146 1 CTTCCCAGTTTTTGCTCCCC 14 160 1 ********** MAP Score: 2.85446 Motif 13 TTTAGCTCCGGGGAGCAAAACTGCCTGTCAG 1 211 0 TTTGCTCCCCGGAGCTAAAACCCATCTCGAC 1 223 1 CGATCGCCGGGGGAAAAAAATGATGGTCAGC 2 96 0 GGTCAGCCCTGGGGAAAAGCCTGGCAACCCA 7 114 0 ACCAGTTCTTGGGGGCAAAAACTAGTCAATT 7 184 1 CCATCGCCAAGGGACAAAGGCGAAAATCAGC 8 12 1 CAGAACCCTAGGGGAAAAGAAGATCAAGGAT 10 146 0 CCCATCGATAGGGGAAAACCACCCTGGCGAT 10 185 0 GATTATGAATGGTAACCAGCCCCCATCGATA 10 206 0 TCCATTTGTTTGGGCCAAGACTCTGAGAGCC 11 28 0 GTCTCCTTAGGGTGTAAAGACTGGCTATGGG 11 208 0 GAGACTTAATGGGAGACACCCTAACAGAAAA 12 92 1 GGGAAAAAAGACGCAAAGTAGG 13 1 1 TCGGGTGCCCGGAAGCAAACCCAGGGTTTTC 14 51 1 AAGAGATTGGCGAGGAAAGAATCCGCTATGA 14 89 0 GGGGAGCAAAAACTGGGAAGAGA 14 157 0 **** ****** MAP Score: 2.65624 Motif 14 CCCGTAGAGATGGGCAGAAATAAGCACAAC 1 82 1 TTAGCTCCGGGGAGCAAAACTGCCTGTCAG 1 211 0 GGCGATCGCCGGGGGAAAAAAATGATGGTC 2 99 0 GTCAACAAATCTAACAGAAA 5 28 1 TCGGTCAGCCCTGGGGAAAAGCCTGGCAAC 7 117 0 TAATTAACCCCGAGCAGAACTGCTATGATT 8 70 1 TTCCAGAACCCTAGGGGAAAAGAAGATCAA 10 150 0 GCCCCCATCGATAGGGGAAAACCACCCTGG 10 189 0 AAAAAACAGACGGGGAGAACTCCACTCTAC 11 152 0 GGGAGACACCCTAACAGAAAAGCTGAGGGT 12 102 1 AAGCTGAGGGTGAAGAGAAAGTCCAGACCA 12 121 1 GGGCACCCGACTAAGGGAAACACCAGTAAT 14 31 0 GCAAAAACTGGGAAGAGAAATTTATTGGAG 14 145 0 GGGGAGCAAAAACTGGGAAGAG 14 158 0 ********** MAP Score: 1.9031