AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID002_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943390905
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	sapA	300	homolog of Salmonella peptide transport periplasmic protein

Motif 1
        AGACGATCGGTCAGTATCGTTGTC	0	2	1
TCCGGATAAAGCGTTCACGCCGCATCTGGCTA	0	32	1
TGGGTTTCTCACGATCGTACCGCTCTGCTCCT	0	93	1
CATCTGTTCAACATTCGTACCCGTGATTTCTC	0	155	0
CACCTGTTCAACGACCAACCACACGGCCCTCA	0	194	1
          *******  ***
MAP Score: 2.53768

Motif 2
GTCAGTATCGTTGTCCGGATAAAGCGTTCACGCCGCATCTG	0	19	1
GCACTGCAGCGTGCTTTAATGGGTTTCTCACGATCGTACCG	0	74	1
GTTCTGTGAGTTATAGTTATAGAGAAATCACGGGTACGAAT	0	134	1
GGTACGAATGTTGAACAGATGGCGACGTCACCTGTTCAACG	0	166	1
TCATTAAATATTAGTAAGATAGCCTCTTTACATAAAATCCC	0	261	1
          ***     ** *     ****
MAP Score: 1.69387