AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID002_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943390907
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	sapA	300	homolog of Salmonella peptide transport periplasmic protein

Motif 1
      AGACGATCGGTCAGTATCGTTGTCCGGAT	0	4	1
GCTAACAATGACACGCACTGCAGCGTGCTTTAATG	0	60	1
GGTTTCTCACGATCGTACCGCTCTGCTCCTCGCTA	0	95	1
TACGAATGTTGAACAGATGGCGACGTCACCTGTTC	0	168	1
TTCAACGACCAACCACACGGCCCTCATTACGACCC	0	200	1
CGACCCCTGAACACAAACGGTAATGGCAAATGTCA	0	229	1
          ** ** ** **  **
MAP Score: 1.35181

Motif 2
TTTATCCGGACAACGATACTGACCGATCGTCT  	0	8	0
ATCTGGCTAACAATGACACGCACTGCAGCGTGCT	0	55	1
CGCCATCTGTTCAACATTCGTACCCGTGATTTCT	0	156	0
GTTCAACGACCAACCACACGGCCCTCATTACGAC	0	199	1
TACTAATATTTAATGACATTTGCCATTACCGTTT	0	243	0
GGATTTTATGTAAAGAGGCTATCTTACTAATATT	0	267	0
          *** *** **  **
MAP Score: 0.446454