AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID006_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943390925
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	pstB	182	ATP-binding component of high-affinity phosphate-specific transport system
#1	pstC	86	high-affinity phosphate-specific transport system, cytoplasmic membrane component
#2	pstS	300	high-affinity phosphate-specific transport system; periplasmic phosphate-binding protein

Motif 1
      TATTGCTGACACGGTTTTCCCCTCA	0	4	1
CTTTTTGACTCTGTACACGGTTAACACTTTG	0	78	1
GGCGTTCACGCCGCATCCGGCAAAGTGTTAA	0	98	0
TTACCGTAGGCCGGATCAGGCGTTCACGCCG	0	116	0
GATGCACTTCGCTAATCAGGCTTACCGTAGG	0	137	0
GATTAGCGAAGTGCATCAGGCACGATGAGGA	0	151	1
GCGTAAAACACCGTACCCGGCCTGGAGTTTT	1	11	0
GTGTTTTACGCCGCATCCGGCATTACAAAAT	1	31	1
          *** *******
MAP Score: 18.1972

Motif 2
          TATTGCTGACACGGTTTTCCCC	0	0	1
GCTGACACGGTTTTCCCCTCACCCTAACCCTC	0	14	1
GGGGCATTTTTCTTCCTGTTATGTTTTTAATC	2	19	1
TCGGCTACTTTTTCTCTGTCACAGAATGAAAA	2	88	1
AGAATGAAAATTTTTCTGTCATCTCTTCGTTA	2	110	1
GAAGACTTTATCTCTCTGTCATAAAACTGTCA	2	189	1
CTCTCTGTCATAAAACTGTCATATTCCTTACA	2	200	1
AAAACTGTCATATTCCTTACATATAACTGTCA	2	211	1
ATTCCTTACATATAACTGTCACCTGTTTGTCC	2	222	1
          * ** *******
MAP Score: 12.7848

Motif 3
     TATTGCTGACACGGTTTTCCCCTCACC	0	5	1
GGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGG	0	47	0
GGGGACCGACCGAGCGCCTTTTTGACTCTGTA	0	61	1
ACTCTGTACACGGTTAACACTTTGCCGGATGC	0	85	1
AACACTTTGCCGGATGCGGCGTGAACGCCTGA	0	100	1
TACCGTAGGCCGGATCAGGCGTTCACGCCGCA	0	114	0
ATGCACTTCGCTAATCAGGCTTACCGTAGGCC	0	135	0
AACTCCAGGCCGGGTACGGTGTTTTACGCCGC	1	13	1
TTTGTAATGCCGGATGCGGCGTAAAACACCGT	1	28	0
ATTTTTCTTCCTGTTATGTTTTTAATCAAACA	2	24	1
CCGTCATCTTCGGCTACTTTTTCTCTGTCACA	2	79	1
GAAAATTTTTCTGTCATCTCTTCGTTATTAAT	2	115	1
TTACATATAACTGTCACCTGTTTGTCCTATTT	2	227	1
          *** * ******
MAP Score: 10.7562

Motif 4
        TATTGCTGACACGGTTTTCCCCTC	0	2	1
CCCTAACCCTCTCCCCAGAGGGGCGAGGGGAC	0	35	1
GTTAACACTTTGCCGGATGCGGCGTGAACGCC	0	97	1
GCGGCGTGAACGCCTGATCCGGCCTACGGTAA	0	115	1
 TGCAATCTTTTCCTCATCGTGCCTGATGCAC	0	161	0
     TAAAACTCCAGGCCGGGTACGGTGTTT	1	5	1
CGGTGTTTTACGCCGCATCCGGCATTACAAAA	1	29	1
     AATGTCTCCTGGGAGGATTCATAAAGC	2	283	0
          **** ** ****
MAP Score: 7.61116

Motif 5
CCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGG	0	29	1
TCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA	0	98	0
TGCGGCGTGAACGCCTGATCCGGCCTACGGTAAG	0	114	1
       TAAAACTCCAGGCCGGGTACGGTGTTT	1	3	1
ACGGTGTTTTACGCCGCATCCGGCATTACAAAAT	1	28	1
          *****    *****
MAP Score: 3.56499

Motif 6
      TATTGCTGACACGGTTTTCCCCTC	0	4	1
TCGCCCCTCTGGGGAGAGGGTTAGGGTGAG	0	31	0
TCTCCCCAGAGGGGCGAGGGGACCGACCGA	0	44	1
CTTTTTGACTCTGTACACGGTTAACACTTT	0	78	1
TAACACTTTGCCGGATGCGGCGTGAACGCC	0	99	1
ACGCCTGATCCGGCCTACGGTAAGCCTGAT	0	124	1
AAACTCCAGGCCGGGTACGGTGTTTTACGC	1	12	1
          **********
MAP Score: 1.55608