AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID006_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943390949
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	pstB	182	ATP-binding component of high-affinity phosphate-specific transport system
#1	pstC	86	high-affinity phosphate-specific transport system, cytoplasmic membrane component
#2	pstS	300	high-affinity phosphate-specific transport system; periplasmic phosphate-binding protein

Motif 1
TTAACACTTTGCCGGATGCGGCGTGAACGCC	0	98	1
ATTTTGTAATGCCGGATGCGGCGTAAAACAC	1	31	0
AAAACTCCAGGCCGGGTACGGTGTTTTACGC	1	11	1
CGGCGTGAACGCCTGATCCGGCCTACGGTAA	0	116	1
TCCTCATCGTGCCTGATGCACTTCGCTAATC	0	151	0
CCTACGGTAAGCCTGATTAGCGAAGTGCATC	0	137	1
AGAAAAATGCCCCGCTTACGCA         	2	1	0
CAAAGTGTTAACCGTGTACAGAGTCAAAAAG	0	78	0
TGAGGGGAAAACCGTGTCAGCAATA      	0	4	0
          ******* ***
MAP Score: 16.1287

Motif 2
          TATTGCTGACACGGTTTTCCCC	0	0	1
GCTGACACGGTTTTCCCCTCACCCTAACCCTC	0	14	1
GGGGCATTTTTCTTCCTGTTATGTTTTTAATC	2	19	1
TCGGCTACTTTTTCTCTGTCACAGAATGAAAA	2	88	1
AGAATGAAAATTTTTCTGTCATCTCTTCGTTA	2	110	1
GAAGACTTTATCTCTCTGTCATAAAACTGTCA	2	189	1
CTCTCTGTCATAAAACTGTCATATTCCTTACA	2	200	1
AAAACTGTCATATTCCTTACATATAACTGTCA	2	211	1
ATTCCTTACATATAACTGTCACCTGTTTGTCC	2	222	1
          * ** *******
MAP Score: 12.7848

Motif 3
        TATTGCTGACACGGTTTTCCCCTCA	0	2	1
CCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGG	0	30	0
GCCTTTTTGACTCTGTACACGGTTAACACTTTG	0	76	1
ACACGGTTAACACTTTGCCGGATGCGGCGTGAA	0	92	1
ATCAGGCTTACCGTAGGCCGGATCAGGCGTTCA	0	121	0
ATCTTTTCCTCATCGTGCCTGATGCACTTCGCT	0	155	0
     TAAAACTCCAGGCCGGGTACGGTGTTTT	1	5	1
AAAGTCATTTTGTAATGCCGGATGCGGCGTAAA	1	35	0
TTGTCACATGGAGTTGGCAGGATGTTTGATTAA	2	45	0
     AATGTCTCCTGGGAGGATTCATAAAGCA	2	282	0
          * *  ********
MAP Score: 7.6379

Motif 4
     TATTGCTGACACGGTTTTCCCCTCACCCTAACCCT	0	5	1
AGGGGACCGACCGAGCGCCTTTTTGACTCTGTACACGGTT	0	60	1
CTTTTTGACTCTGTACACGGTTAACACTTTGCCGGATGCG	0	78	1
AACGCCTGATCCGGCCTACGGTAAGCCTGATTAGCGAAGT	0	123	1
  TGCGTAAGCGGGGCATTTTTCTTCCTGTTATGTTTTTA	2	8	1
CCGTCATCTTCGGCTACTTTTTCTCTGTCACAGAATGAAA	2	79	1
GAAGAGATGACAGAAAAATTTTCATTCTGTGACAGAGAAA	2	98	0
TTACATATAACTGTCACCTGTTTGTCCTATTTTGCTTCTC	2	227	1
          * *  *   ***   *** *
MAP Score: 5.79524

Motif 5
GCTGACACGGTTTTCCCCTCACCCTAACCCTCT	0	14	1
CCCCTCACCCTAACCCTCTCCCCAGAGGGGCGA	0	28	1
CGAGCGCCTTTTTGACTCTGTACACGGTTAACA	0	71	1
GCGGGGCATTTTTCTTCCTGTTATGTTTTTAAT	2	17	1
CTTCGGCTACTTTTTCTCTGTCACAGAATGAAA	2	86	1
AGAATGAAAATTTTTCTGTCATCTCTTCGTTAT	2	110	1
CTGAAGACTTTATCTCTCTGTCATAAAACTGTC	2	187	1
CTCTCTGTCATAAAACTGTCATATTCCTTACAT	2	200	1
ATTCCTTACATATAACTGTCACCTGTTTGTCCT	2	222	1
TTTGTCCTATTTTGCTTCTCGTAGCCAACAAAC	2	247	1
          ***  ***** **
MAP Score: 5.29837

Motif 6
ACCCTAACCCTCTCCCCAGAGGGGCGAGGGGA	0	34	1
GTTAACACTTTGCCGGATGCGGCGTGAACGCC	0	97	1
GCTTACCGTAGGCCGGATCAGGCGTTCACGCC	0	117	0
AAGTGCATCAGGCACGATGAGGAAAAGATTGC	0	159	1
CATTTTGTAATGCCGGATGCGGCGTAAAACAC	1	31	0
GAAGAAAAATGCCCCGCTTACGCA        	2	2	0
        AATGTCTCCTGGGAGGATTCATAA	2	286	0
          **** **** **
MAP Score: 0.00903451