AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID008_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943390960
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	hisL	255	his operon leader peptide
#1	hisG	145	ATP phosphoribosyltransferase

Motif 1
         TCTTTCAGGCGATGTGTGCTG	1	1	1
ACATTCAGATCTTCCAGTGGTGCATGAACG	1	35	1
GGAAGGTGATCTTCCGGGGGCTTTCTCATG	1	65	0
GGAAGATCACCTTCCGGGGGCTTTTTTATT	1	80	1
          **********
MAP Score: 9.14103

Motif 2
ATTAATAAATAGTTAATTAACGCTCATCATTG	0	14	0
ATGAATGAGCGGGGAAAGGAGGGGGCTAAGAG	0	127	0
CAATGGATTTGTTTAATGAATGAGCGGGGAAA	0	142	0
AAGTGGTTTAGGTTAAAAGACATCAGTTGAAT	0	213	1
AAAGACATCAGTTGAATAAACATTCACAGAGA	0	228	1
ATCTTCCAGTGGTGCATGAACGCATGAGAAAG	1	43	1
TTTATTGCGCGGTTGATAACGGTTCAGACAGG	1	104	1
GGTTCAGACAGGTTTAAAGAGGAATAACAAA 	1	124	1
          **** ** ****
MAP Score: 1.83294