AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID010_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943390937
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	ybgI	270	orf, hypothetical protein
#1	ybgJ	22	putative carboxylase

Motif 1
ACGTGACGTTGCCGTCAATTGTGGAATTATT	0	10	0
TCTGATTATTTATGCAATATGCTGTCTGATT	0	93	1
AATGTATATTTATGCAATCAGACAGCATATT	0	108	0
GACGCCAAAAGACGCAAATTGTTTATATCAT	0	151	0
AAACAAACCCGACGCCAAAAGACGCAAATTG	0	161	0
TGTTTCTTAATATGTCAAAAGATTGGCTATC	0	187	1
ACCTCGCCAGTTCGTCGATAGCCAATCTTTT	0	203	0
          ******** **
MAP Score: 3.21008

Motif 2
CACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTA	0	36	1
TATTTATGCAATATGCTGTCTGATTGCATAAATATA	0	99	1
ATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATA	0	163	1
TAACATAGCGTTACCTCGCCAGTTCGTCGATAGCCA	0	210	0
 CTTCGCGCCTTCCGTATTCTGATAGCTACACCGTT	0	245	0
       CGAATAATCAGAGGGATCGAAA       	1	3	1
          **  ** * * * ***
MAP Score: 0.696062