AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID010_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943390966
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	ybgI	270	orf, hypothetical protein
#1	ybgJ	22	putative carboxylase

Motif 1
GCGGCGTGCTTGTGTTTCCTTAAAGTTAAA	0	50	1
TTGATACAGATCTGATTATTTATGCAATAT	0	83	1
CAATATGCTGTCTGATTGCATAAATATACA	0	107	1
TGGCGTCGGGTTTGTTTCTTAATATGTCAA	0	175	1
CCTTCCGTATTCTGATAGCTACACCGTTAA	0	243	0
TTTCGATCCCTCTGATTATTCG        	1	2	0
          **********
MAP Score: 5.02921

Motif 2
TTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTT	0	46	1
GATACAGATCTGATTATTTATGCAATATGCTGTCTGATT	0	85	1
CTTCAGCTAATGTATATTTATGCAATCAGACAGCATATT	0	108	0
ATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTT	0	156	1
          **  * *** ***     *
MAP Score: 0.288641