AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID011_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943390945
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	trpE	91	anthranilate synthase component I
#1	trpL	137	trp operon leader peptide
#2	pabB	73	p-aminobenzoate synthetase, component I
#3	pabA	31	p-aminobenzoate synthetase, component II
#4	yhfG	104	orf, hypothetical protein

Motif 1
CAGTGTATTCACCATGCGTAAAGCAATCAGA	0	16	1
TCAGATACCCAGCCCGCCTAATGAGCGGGCT	0	42	1
ACCGTTATGATGTCGGCGCAAAAAACATTAT	1	28	0
CCAACAATTTAGCAGGAGTTAACA       	2	3	0
CCTGCTAAATTGTTGGCGCTAATTATTTCAT	2	18	1
ATTTCATGCTACCCGGCACATAGCCAGTAGA	2	42	1
CGGGCAAGATTGCCCGCGCGAGAAATCA   	4	7	0
CGGGCAATCTTGCCCGCGCTTCTGCTCTCCC	4	22	1
GCTTCTGCTCTCCCGGCGTAACCCGGATTTG	4	39	1
          ********* *
MAP Score: 9.58117

Motif 2
CCCGCCTAATGAGCGGGCTTTTTTTTGAACA	0	54	1
GCGCACTCCCGTTCTGGATAATGTTTTTTGC	1	11	1
CCGTTATGATGTCGGCGCAAAAAACATTATC	1	27	0
CATCATAACGGTTCTGGCAAATATTCTGAAA	1	47	1
CTGCTAAATTGTTGGCGCTAATTATTTCATG	2	19	1
AGTCCTGACTCTACTGGCTATGTGCCGGGTA	2	51	0
 TGATTTCTCGCGCGGGCAATCTTGCCCGCG	4	9	1
GAGAGCAGAAGCGCGGGCAAGATTGCCCGCG	4	20	0
GCCGCTTATACTTGTGGCAAATGGACACGTT	4	69	1
          ** ********
MAP Score: 9.13843

Motif 3
TCAAAAAAAAGCCCGCTCATTAGGCGGGCTG	0	51	0
   GGCGCACTCCCGTTCTGGATAATGTTTT	1	7	1
CCGACATCATAACGGTTCTGGCAAATATTCT	1	43	1
ATTAATTGTCAACAGCTCATTTCAGAATATT	1	66	0
GGTACAAAAGAACCGCGCTATT         	3	1	0
          GGCGGCTCCGGTACAAAAGAA	3	20	0
GGGCAAGATTGCCCGCGCGAGAAATCA    	4	6	0
GGGCAATCTTGCCCGCGCTTCTGCTCTCCCG	4	23	1
TGGCAAATGGACACGTTCAGGGAGGCATCAA	4	83	1
          ******** **
MAP Score: 5.38427

Motif 4
 GGCGCACTCCCGTTCTGGATAATGTTTTT	1	9	1
GACATCATAACGGTTCTGGCAAATATTCTG	1	45	1
        GGCGGCTCCGGTACAAAAGAAC	3	19	0
ATCTTGCCCGCGCTTCTGCTCTCCCGGCGT	4	28	1
          **********
MAP Score: 1.19254