AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID012_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943390954
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	potF	300	periplasmic putrescine-binding protein; permease protein
#1	potA	249	ATP-binding component of spermidine/putrescine transport

Motif 1
  ATTATCTGCTGTTTTTAACCTTTTCTTA	0	8	1
TGTTTTTAACCTTTTCTTAAAGATTATTTC	0	19	1
TGTTAAATACCGTTTTTTAATCCGAGCTAT	0	103	1
AGAAAGTTCTCTTTTCTTACACCGCGCCGA	0	197	1
AAAATATGCACGTTTATTGCATATCTTTCA	0	230	1
AACTTTTGTTCGTTTGTTAACGAACTTTCA	0	267	1
GTCACCCTCACTTTTTGTGACAACATTATT	1	13	1
CAATATTTGTCTTTTCTTGCTTCTTAATAA	1	38	0
          **********
MAP Score: 8.72241

Motif 2
TATCACATAGAGCAAATATGCATAAAAATT	0	73	1
AACGGTATTTAACAAATTTTTATGCATATT	0	87	0
CCGCGCCGATAAAAAATATGCACGTTTATT	0	218	1
TTGTCACACTGAAAGATATGCAATAAACGT	0	239	0
CTTTCAGTGTGACAACTTTTGTTCGTTTGT	0	254	1
AGCAAGAAAAGACAAATATTGCGTCAGGTC	1	47	1
AGGTAATGCTGATAAATATTCCCGCTTGCA	1	88	0
AGTAATTCACAACAAAGATTGGCGATTCAA	1	139	1
          **********
MAP Score: 3.34497