AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID014_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943390970
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	rfbA	57	glucose-1-phosphate thymidylyltransferase
#1	rfbB	300	dTDP-glucose 4,6 dehydratase
#2	rfe	239	UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase; synthesis of enterobacterial common antigen (ECA)

Motif 1
TCTTATGCCAAAAACGCCACGTGTTTACGT	2	15	1
ATATAAAAGCAAAACGCCACGTAAACACGT	2	33	0
AATTTTCCTAACATCGCCAGCGCGGCATTA	2	72	0
TTTATATAAAACAACGGCAGGAAGATTCGC	1	14	0
CAAATTGCATAACATGCCAGCAAATTCCAG	2	103	0
GTCCGTTCCAAACCCACCAGTCCTGTGCAA	2	152	0
AACTTTGAATAAAACCCTACTGCTAACTCG	1	59	0
TGTTTTATATAAACCATCAGAATAACAACG	1	31	1
          **********
MAP Score: 5.66638

Motif 2
TCATAGGCATGCATGCAGTGCTCTGGTAGCT	1	181	1
AGGGGCGGTAGCGTGCATTAATACCTCTATT	1	220	1
TTACTTCAGAGCATGCTGTGAAATAAGCGGC	1	264	0
GAATTTGCTGGCATGTTATGCAATTTGCATA	2	106	1
       AATGCATGCTCTCAGAGAAAATTA	2	225	0
          ******* ***
MAP Score: 3.80239