AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID025_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943391122
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	manX	300	PTS enzyme IIAB, mannose-specific
#1	manY	62	PTS enzyme IIC, mannose-specific

Motif 1
TATACTCCATGGTTGTTAAACGGGAGTTAA	0	11	1
GTTGTTAAACGGGAGTTAAACATATCAGAG	0	22	1
CGTTTGCAAAGGAAGGTAAATCTTTGCCAA	0	63	0
CTTTGCAAACGAATGTGACAAGGATATTTT	0	82	1
CAGAAATTTCGAAAGGTAAAATATCCTTGT	0	99	0
TCTGCTAATCGAAAGTTAAATTACGGATCT	0	125	1
ACGTAAACAGGAGAAGTACA          	1	52	1
          **********
MAP Score: 7.5066

Motif 2
AGCAGAAATTTCGAAAGGTAAAATATCCTTGTCAC	0	96	0
TTTCTGCTAATCGAAAGTTAAATTACGGATCTTCA	0	123	1
TTACGGATCTTCATCACATAAAATAATTTTTTCGA	0	145	1
AATAATTTTTTCGATATCTAAAATAAATCGCGAAA	0	166	1
          ***  *  **** **
MAP Score: 4.30307