AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID026_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943391131
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	fabZ	104	(3R)-hydroxymyristol acyl carrier protein dehydratase
#1	rplS	41	50S ribosomal subunit protein L19
#2	trmD	30	tRNA methyltransferase; tRNA (guanine-7-)-methyltransferase
#3	rpsP	248	30S ribosomal subunit protein S16
#4	ffh	91	GTP-binding export factor binds to signal sequence, GTP and RNA

Motif 1
CCATCTTTTGTTCGCCAAACTTTACGGCCTGTCTCATTCT	0	14	1
GGCCTGGCTTGTTTGCCATTTTGGCACCGGGATGTGCTCG	3	12	1
GGATGTGCTCGTCATCCTCACGTACTGCGTGTACGCTCCG	3	41	1
TGTACGCTCCGGTGACTGCGCGCACTCCGGCACCAAACTG	3	70	1
GCACCAAACTGGCTGCACCGCCGACGGCCTTTTACAGCAG	3	99	1
AACGGAGTCCGGTGTCATATTAAAAGCCCGAAAATTTTAC	3	176	0
TATGACACCGGACTCCGTTCCTCGATGGGGTCCGGTTGTT	3	197	1
CAACAAAGACGCCTTCATGTTATACTGCGGCAAAATACTG	4	12	1
CGCGATTGCGGCCAACCGTTTCCACCCCAGGCGAGAGACA	4	61	1
          * *  *    *  ** ****
MAP Score: 8.107

Motif 2
GCCGCAATCGTAAGAATGAGACAGGCCGTAAAGTTTGG	0	28	0
GTCTCATTCTTACGATTGCGGCAGGCCGTGTTATTATT	0	44	1
TTGTCGTTTCTTATATTTTGACAGGAAGAGTATC    	0	80	1
GCTTGTTTGCCATTTTGGCACCGGGATGTGCTCGTCAT	3	18	1
ACTGCGTGTACGCTCCGGTGACTGCGCGCACTCCGGCA	3	64	1
GCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCA	3	82	0
GACTCCGTTCCTCGATGGGGTCCGGTTGTTTTATTCAC	3	207	1
GATGATGTGTCGCGATTGCGGCCAACCGTTTCCACCCC	4	51	1
          *  * *** * * **  *
MAP Score: 8.05705

Motif 3
CATTCTTACGATTGCGGCAGGCCGTGTTAT	0	48	1
CTTGTTTGCCATTTTGGCACCGGGATGTGC	3	19	1
GACTGCGCGCACTCCGGCACCAAACTGGCT	3	83	1
GTTGATTGCAATTCCCGCAAAAATGAGTAA	3	150	1
TTCATGTTATACTGCGGCAAAATACTGATG	4	25	1
ATGTGTCGCGATTGCGGCCAACCGTTTCCA	4	55	1
          **********
MAP Score: 7.72271

Motif 4
CCAAACTTTACGGCCTGTCTCATTCTTACGATTGCGGCAGGCCGTG	0	28	1
     TCGGCCTGGCTTGTTTGCCATTTTGGCACCGGGATGTGCTC	3	5	1
GTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGG	3	78	0
GGCTGCACCGCCGACGGCCTTTTACAGCAGAGTTAGCAACTGTTGA	3	109	1
AATATGACACCGGACTCCGTTCCTCGATGGGGTCCGGTTGTTTTAT	3	195	1
CGGCAAAATACTGATGATGTGTCGCGATTGCGGCCAACCGTTTCCA	4	39	1
          * * *    *  * *    * *  **
MAP Score: 5.28561

Motif 5
GCAATCGTAAGAATGAGACAGGCCGTAAAGTTTG	0	29	0
TCATTCTTACGATTGCGGCAGGCCGTGTTATTAT	0	47	1
CATCCTCACGTACTGCGTGTACGCTCCGGTGACT	3	53	1
TTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGT	3	73	0
TCCGTTCCTCGATGGGGTCCGGTTGTTTTATTCA	3	210	1
CTTCATGTTATACTGCGGCAAAATACTGATGATG	4	24	1
GATGTGTCGCGATTGCGGCCAACCGTTTCCACCC	4	54	1
          ** **** * ** *
MAP Score: 4.68137

Motif 6
AGGCCGTAAAGTTTGGCGAACAAAAGATGG	0	14	0
TAAGAATGAGACAGGCCGTAAAGTTTGGCG	0	26	0
TCATTCTTACGATTGCGGCAGGCCGTGTTA	0	47	1
ATCCTCACGTACTGCGTGTACGCTCCGGTG	3	54	1
CGCTCCGGTGACTGCGCGCACTCCGGCACC	3	74	1
CCGGCACCAAACTGGCTGCACCGCCGACGG	3	96	1
CTCTGCTGTAAAAGGCCGTCGGCGGTGCAG	3	111	0
TGTTGATTGCAATTCCCGCAAAAATGAGTA	3	149	1
TGTCATATTAAAAGCCCGAAAATTTTACTC	3	174	0
ATCATCAGTATTTTGCCGCAGTATAACATG	4	27	0
GATGTGTCGCGATTGCGGCCAACCGTTTCC	4	54	1
          **********
MAP Score: 2.58464

Motif 7
TGTCTCATTCTTACGATTGCGGCAGGCCGTGTTAT	0	43	1
GTGCGCGCAGTCACCGGAGCGTACACGCAGTACGT	3	60	0
CGACGGCCTTTTACAGCAGAGTTAGCAACTGTTGA	3	120	1
AAAATTTTACTCATTTTTGCGGGAATTGCAATCAA	3	151	0
GTTGTTTTATTCACACAAGAGGATGTT        	3	231	1
TGATGATGTGTCGCGATTGCGGCCAACCGTTTCCA	4	50	1
      TGTCTCTCGCCTGGGGTGGAAACGGTTGG	4	72	0
          ****   *****  *
MAP Score: 1.96436

Motif 8
TAATAACACGGCCTGCCGCAATCGTAAGAATGAG	0	46	0
          GCCCCCGAGATATCAGTTTACCCA	1	0	1
          ACCACCGGATAAACGGTAAAAGAC	2	0	1
TTGCCATTTTGGCACCGGGATGTGCTCGTCATCC	3	24	1
CATCCTCACGTACTGCGTGTACGCTCCGGTGACT	3	53	1
ACGCTCCGGTGACTGCGCGCACTCCGGCACCAAA	3	73	1
CCAAACTGGCTGCACCGCCGACGGCCTTTTACAG	3	102	1
TTTTACTCATTTTTGCGGGAATTGCAATCAACAG	3	148	0
CTTTTAATATGACACCGGACTCCGTTCCTCGATG	3	190	1
CTTCATGTTATACTGCGGCAAAATACTGATGATG	4	24	1
GATGTGTCGCGATTGCGGCCAACCGTTTCCACCC	4	54	1
AACCGTTTCCACCCCAGGCGAGAGACA       	4	74	1
          * ******* *  *
MAP Score: 0.425025