AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID027_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943391145
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	hemA	213	enzyme in alternate path of synthesis of 5-aminolevulinate
#1	prfA	41	peptide chain release factor RF-1
#2	yrdD	62	putative DNA topoisomerase
#3	smf_2	53	orf, fragment 2
#4	smf_1	129	orf, fragment 1

Motif 1
TAAAAGAGAGCGCCCCCTTTTGGAGTAATT	0	124	0
ATTGATCTTACGCATCCTGTATGATGCAAG	0	153	1
 AGGCGTAAATGCACCCTGTAAAAAAAGAA	1	22	0
     TATTACGCACCGTGAACAGTGCTGA	2	47	0
    AAGAATCGCACCTTGTTTTATTAACC	3	37	0
          **********
MAP Score: 8.52525

Motif 2
TTGAGATACGTTGCAGTTATAACCCTTAATGCTA	0	25	1
TATGTTCAAGTTGTCTTAATTGCCAGAATCTAAC	0	80	1
GCGCCCCCTTTTGGAGTAATTGCCGAAAGCCGTT	0	111	0
CCTATCAACGTTGGTATTATTTCCCGCAGAC   	0	192	1
GAATCGCACCTTGTTTTATTAACCAGTGAGGCCC	3	27	0
          ***   ***** **
MAP Score: 6.28501