AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID027_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943391284
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	hemA	213	enzyme in alternate path of synthesis of 5-aminolevulinate
#1	prfA	41	peptide chain release factor RF-1
#2	yrdD	62	putative DNA topoisomerase
#3	smf_2	53	orf, fragment 2
#4	smf_1	129	orf, fragment 1

Motif 1
GCGTTACCGTCCGCTATCGTCTATGTTCAAGT	0	59	1
CGAAAGCCGTTAGATTCTGGCAATTAAGACAA	0	90	0
CAGAATCTAACGGCTTTCGGCAATTACTCCAA	0	103	1
TAGGGTTAGTCTGCTTGCATCATACAGGATGC	0	164	0
GTGAACAGTGCTGATTTCGCCATAACAACTTA	2	29	0
ATTGCTAAGGCTGCTTATGGCAGGGAGATAAG	4	106	1
          * **** *****
MAP Score: 5.17643

Motif 2
TAAAAGAGAGCGCCCCCTTTTGGAGTAATT	0	124	0
ATTGATCTTACGCATCCTGTATGATGCAAG	0	153	1
 AGGCGTAAATGCACCCTGTAAAAAAAGAA	1	22	0
    AAGAATCGCACCTTGTTTTATTAACC	3	37	0
CTAGACAAATCCCCCTCTGATTGACAGCAT	4	58	1
          **********
MAP Score: 4.62569

Motif 3
     AGTGATGACAAGTCCTTGAGATACGT	0	5	1
TTTATTGATCTTACGCATCCTGTATGATGCA	0	150	1
TGATGCAAGCAGACTAACCCTATCAACGTTG	0	174	1
        TATTACGCACCGTGAACAGTGCT	2	49	0
CTTCTATTCTAGACAAATCCCCCTCTGATTG	4	50	1
ACAGCATCACTGACCAATCGCAAAGATTGCT	4	81	1
          **** ******
MAP Score: 2.76959

Motif 4
CAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATG	0	38	1
AAGATTATTTCTTCTATTCTAGACAAATCCCCCTCTGATTGACAGC	4	40	1
TTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTAC	0	84	1
TACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGT	0	161	1
         CCTTATCTCCCTGCCATAAGCAGCCTTAGCAATCTTT	4	102	0
GGATGCGTAAGATCAATAAAAGAGAGCGCCCCCTTTTGGAGTAATT	0	124	0
    AGTGATGACAAGTCCTTGAGATACGTTGCAGTTATAACCCTT	0	6	1
AGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCG	3	16	0
          * *   * * ***        **  *
MAP Score: 2.6278