AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID029_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943391318
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	carA	300	carbamoyl-phosphate synthetase, glutamine (small) subunit

Motif 1
TGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTAT	0	19	1
TTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTT	0	50	1
TTCTTGCTGCGCAAGCGTTTTCCAGAACAGGTTAGA	0	66	1
AACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTG	0	91	1
CCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCA	0	164	1
TCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGG	0	194	1
          **   *****  * **
MAP Score: 4.34214

Motif 2
CAGCAAGAAGATTGCATGAAATAAAAACGA	0	45	0
TGCGCAAGCGTTTTCCAGAACAGGTTAGAT	0	73	1
TTTGTCGCTTAATGCCTGTAAAACATGCAT	0	109	1
TAGCGCCCATATCTCCAGAATGCCGCCGTT	0	183	1
AATGCCGCCGTTTGCCAGAAATTCGTCGGT	0	201	1
          **********
MAP Score: 3.43929