AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID033_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943391324
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	b0762	128	orf, hypothetical protein
#1	modA	166	molybdate-binding periplasmic protein; permease

Motif 1
  AACAATGTCCTGGCAAAAGTCTTATTGTG	0	8	1
AAAACGAACGCCACGCAAAGCTGACCGCACA	0	43	1
GCAAAGCTGACCGCACAAAAGGGGAGTGCTT	0	57	1
TAACCGCTAAGCACAGAAAAGCACTCCCCTT	0	75	0
AAAGAAAATGCCCGACTAAGCGGGCATTCAG	1	14	0
AAAAATATCGGCAGGAAAAGCAGGAAGTTGA	1	48	0
TTCTTATCTACCTCACAAAGGTTAGCAATAA	1	78	1
AGCAATAACTGCTGGGAAAATTCCGAGTTAG	1	101	1
          ** ********
MAP Score: 12.1784

Motif 2
AGGGGAGTGCTTTTCTGTGCTTAGCGGTTAGAA	0	76	1
GGCATTTTCTTTTTCTCAACTTCCTGCTTTTCC	1	33	1
TGCCGATATTTTTTCTTATCTACCTCACAAAGG	1	66	1
TTAGTCGTTATATTGTCGCCTACATAACGTTAC	1	128	1
          ******   ****
MAP Score: 0.390974