AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID037_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943391345
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	queA	92	synthesis of queuine in tRNA; probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase
#1	tgt	55	tRNA-guanine transglycosylase
#2	yajC	22	orf, hypothetical protein
#3	secD	27	protein secretion; membrane protein, part of the channel

Motif 1
AGGGGGTAAAGGTTGCAGGGAGAGCGCCCC	0	29	1
CGGGTAGTCTAGTGCCGGGGCGCTCTCCCT	0	45	0
GACTAAAATAAGAGGCGGGTAGTCTAGTGC	0	60	0
GTTTTAAACCAGCGCCGCGGAA        	1	2	0
          **********
MAP Score: 3.57839