AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID038_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943391192
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	ycjM	185	putative polysaccharide hydrolase
#1	ugpA	97	sn-glycerol 3-phosphate transport system, integral membrane protein
#2	ugpB	300	sn-glycerol 3-phosphate transport system; periplasmic binding protein

Motif 1
AAAAAAAACGGCGCATAAGCGCCGCTCATGGT	0	18	0
CAGGGAAAAAGCGTATTTGTGAGCTGACGCAA	0	84	0
AAACCCTTGTGCTCAATTGACAGTTTATTTTC	0	142	1
GATAAGCGAAACGCATCCGACATTACACTGA 	1	9	0
GATGCGTTTCGCTTATCTGACCTGGCATCGCG	1	24	1
GATGCGCTTCGCTTATCCGGCCTACACGCGAT	1	50	0
GATAAGCGAAGCGCATCCGGCACAGTTCAGGA	1	65	1
GGCGTAAACGCCTTATCAGGCCTACAAGATCG	2	31	0
GGCGTTTACGCCGCATCCGGCATGAAACGATG	2	51	1
TCTACAGATTGCTCATCGTTTCATGCCGGATG	2	64	0
ATATTTTCCCGCTTATCCGTGCCCCATCTCCC	2	114	1
GCGTGAATTCGCGCATTCGGTACAACAAGAGA	2	270	1
          ******* * **
MAP Score: 22.7779

Motif 2
ATGCGCCGTTTTTTTTTCTGTCACACCTTA	0	34	1
ACAAATACGCTTTTTCCCTGGTAAAAAATG	0	96	1
TGGTAAAAAATGATTTCCTGCGTGACTAAA	0	114	1
AATTGACAGTTTATTTTCTGCGGAGTAGTC	0	156	1
     TACGGTTAATTCCTGAACTGTGCCG	1	82	0
AGACCTTCTATATTTTCCCGCTTATCCGTG	2	105	1
ACAAAAAAGTTATTTTTCTGTAATTCGAGC	2	212	1
          **********
MAP Score: 9.20759