AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID042_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943391360
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	kdpB	22	ATPase of high-affinity potassium transport system, B chain
#1	kdpA	300	ATPase of high-affinity potassium transport system, A chain

Motif 1
      TGATATTGAGTGAGCACTGAAT        	0	4	1
ATTTTTGCTTATTGATGGTTTATTTACATTCATCCT	1	22	1
GTGTAACTTAATTACAGGATGAATGTAAATAAACCA	1	37	0
TTCGCAAAAATCTGCGGGCGGGGTGTAAAAAAAGTA	1	126	0
CTTTTAGGCCACTGGAGGTGCACTGTGAGTGCAGGC	1	197	1
GTGCACTGTGAGTGCAGGCGTGATAACCGGCGTATT	1	214	1
TAACCGGCGTATTGCTGGTGTTTTTATTACTGGGTT	1	237	1
TGCCCTGATCAATGCGGAGGCGTTCTG         	1	283	1
          * *** ** * * * *
MAP Score: 6.5719

Motif 2
   TGATATTGAGTGAGCACTGAAT       	0	7	1
GCAAAAATCTGCGGGCGGGGTGTAAAAAAAGT	1	127	0
CGGAAGGGTAGAATTCTGGCTGCAAAGATTTC	1	159	0
TTAGGCCACTGGAGGTGCACTGTGAGTGCAGG	1	200	1
GTGAGTGCAGGCGTGATAACCGGCGTATTGCT	1	221	1
GTTTTTATTACTGGGTTATCTGGTTTATGCCC	1	256	1
TGATCAATGCGGAGGCGTTCTG          	1	288	1
          * ***** ****
MAP Score: 0.593009