AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID042_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943391571
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	kdpB	22	ATPase of high-affinity potassium transport system, B chain
#1	kdpA	300	ATPase of high-affinity potassium transport system, A chain

Motif 1
          TGATATTGAGTGAGCACTGAAT        	0	0	1
ACTTATTTTTGCTTATTGATGGTTTATTTACATTCATCCT	1	18	1
ATCACTTTTAGGCCACTGGAGGTGCACTGTGAGTGCAGGC	1	193	1
GGAGGTGCACTGTGAGTGCAGGCGTGATAACCGGCGTATT	1	210	1
GTGATAACCGGCGTATTGCTGGTGTTTTTATTACTGGGTT	1	233	1
TTTATGCCCTGATCAATGCGGAGGCGTTCTG         	1	279	1
          *   * **  ** **  * *
MAP Score: 4.13213

Motif 2
TTTTGCTTATTGATGGTTTATTTACATTCATCCT	1	24	1
AAATCATGGCTTTTGCCATTTTTATACTTTTTTT	1	102	1
GCACTGTGAGTGCAGGCGTGATAACCGGCGTATT	1	216	1
ACCGGCGTATTGCTGGTGTTTTTATTACTGGGTT	1	239	1
GTTATCTGGTTTATGCCCTGATCAATGCGGAGGC	1	270	1
          ** **** * ** *
MAP Score: 0.511225