AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID046_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943391425
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	mglA	60	ATP-binding component of methyl-galactoside transport and galactose taxis
#1	mglB	279	galactose-binding transport protein; receptor for galactose taxis

Motif 1
     CCGCTTTCAATCTGTGAGTGATTTCAC	1	5	1
TCACAGTATCTTAACAATGTGATAGCTATGAT	1	33	1
GGTTACAACGTTAAAACGGTGCAATCATAGCT	1	56	0
TGTAACCCGTATGTAACAGTGAATAATCACTT	1	81	1
AATTGTTGTTATGACGCTGTTACCTCGGCAAA	1	112	0
ATAACAACAATTAAAGCCGTTTTCTGGAGCGT	1	132	1
AAGAACGAATTTTAAAAAGTGAGCTTCGGCGT	1	176	1
GGCAGTAGAGTTAATGAAGTGTTACTGAACGC	1	204	0
          ** **** ****
MAP Score: 3.04021

Motif 2
TACAATAAGGGCGCAGTAATAGACTGCGCCCA	0	17	0
CACCGTTTTAACGTTGTAACCCGTATGTAACA	1	67	1
ATCACTTTTGCCGAGGTAACAGCGTCATAACA	1	106	1
GTTCTTCCATGCCCGGTAACGCTCCAGAAAAC	1	150	0
GTGTTACTGAACGCCGAAGCTCACTTTTTAAA	1	186	0
TAAATGCTCGGCGGGGCAGTAGAGTTAATGAA	1	218	0
TTTTTCTTATGCAGGGTAGTGCTTGAGATAAA	1	246	0
          *** ****** *
MAP Score: 0.465417

Motif 3
    GACTGATTGGGCGCAGTCTATTACTGCGC	0	6	1
GCCATACAATAAGGGCGCAGTAATAGACTGCGC	0	20	0
ATCTGTGAGTGATTTCACAGTATCTTAACAATG	1	19	1
CAATCATAGCTATCACATTGTTAAGATACTGTG	1	34	0
TGATAGCTATGATTGCACCGTTTTAACGTTGTA	1	52	1
TTGTAACCCGTATGTAACAGTGAATAATCACTT	1	80	1
TAATTGTTGTTATGACGCTGTTACCTCGGCAAA	1	112	0
          **** *** ** *
MAP Score: 0.05156