AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID046_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943391638
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	mglA	60	ATP-binding component of methyl-galactoside transport and galactose taxis
#1	mglB	279	galactose-binding transport protein; receptor for galactose taxis
#2	galS	141	mgl repressor, galactose operon inducer
#3	folE	257	GTP cyclohydrolase I

Motif 1
ACCGTTTTAACGTTGTAACCCGTATGTAAC	1	68	1
GTTGTTATGACGCTGTTACCTCGGCAAAAG	1	110	0
TTAACAAAACGGCTGTAACCGTTTCCATTG	2	28	1
CCGTTTCCATTGCTGTGACTCGATTCACGA	2	46	1
GTTATGAGATTGCAGTAAATGACTGCTTGC	2	110	0
TCTCATAACAGGTAGTGAAT          	2	131	1
TTATTCAATGTGCTGTGAGTAACTTTCACT	3	55	1
CAATAATTATCGCTGTGAATACTGGATTAT	3	140	1
ACAATAATCAGGCTGTAAATCAGCTTAATA	3	186	1
          **********
MAP Score: 10.5372

Motif 2
AGTGATTTCACAGTATCTTAACAATGTGATAGC	1	26	1
GCTATGATTGCACCGTTTTAACGTTGTAACCCG	1	57	1
GCCGAGGTAACAGCGTCATAACAACAATTAAAG	1	115	1
CGTTCAGTAACACTTCATTAACTCTACTGCCCC	1	205	1
CGGTTACAGCCGTTTTGTTAACGAATGTGATCC	2	16	0
TCATTTACTGCAATCTCATAACAGGTAGTGAAT	2	118	1
ATTTGCATAACGATGTTTTAACATCTGCTGATG	3	90	1
GGCTGTAAATCAGCTTAATAACTTTGCCCCCAC	3	196	1
          ** * * ******
MAP Score: 8.74666

Motif 3
          CCGCTTTCAATCTGTGAGTGATTTCAC	1	0	1
GTTTTCTGGAGCGTTACCGGGCATGGAAGAACGAATT	1	150	1
TAAAAAGTGAGCTTCGGCGTTCAGTAACACTTCATTA	1	188	1
TAACTCTACTGCCCCGCCGAGCATTTATCTCAAGCAC	1	223	1
TTTATCTCAAGCACTACCCTGCATAAGAAAAACCGGA	1	246	1
GACAAAATAGCCGCCAGCAAGCAGTCATTTACTGCAA	2	94	1
ATTGTAATTGCCGCTGCCTTTCATCAGCAGATGTTAA	3	107	0
TGGATTATGTGCGCCGCCTCACGCACAATAATCAGGC	3	162	1
AGGTGTGACGCCTCCGCCCTGCGTGGGGGCAAAGTTA	3	214	0
          ** ** **  ***   *
MAP Score: 6.83482

Motif 4
GGCGCAGTAATAGACTGCGCCCAATCAGTC  	0	8	0
GGCGCAGTCTATTACTGCGCCCTTATTGTATG	0	19	1
TGTGATAGCTATGATTGCACCGTTTTAACGTT	1	50	1
CTTCATTAACTCTACTGCCCCGCCGAGCATTT	1	217	1
GAATACTGGATTATGTGCGCCGCCTCACGCAC	3	156	1
TCAGCTTAATAACTTTGCCCCCACGCAGGGCG	3	205	1
          ** * *******
MAP Score: 3.08228

Motif 5
GCGCAGTCTATTACTGCGCCCTTATTGTATGGCCAACAAGG	0	20	1
TACTGTGAAATCACTCACAGATTGAAAGCGG          	1	0	0
GTGAGTGATTTCACAGTATCTTAACAATGTGATAGCTATGA	1	23	1
AAGTGATTATTCACTGTTACATACGGGTTACAACGTTAAAA	1	72	0
CAGTGAATAATCACTTTTGCCGAGGTAACAGCGTCATAACA	1	97	1
ATAACAACAATTAAAGCCGTTTTCTGGAGCGTTACCGGGCA	1	132	1
GGCAGTAGAGTTAATGAAGTGTTACTGAACGCCGAAGCTCA	1	195	0
ATGGAAACGGTTACAGCCGTTTTGTTAACGAATGTGATCCA	2	15	0
AGTCCTGTATTCAGTGCTGACAAAATAGCCGCCAGCAAGCA	2	76	1
AAGCAGTCATTTACTGCAATCTCATAACAGGTAGTGAAT  	2	112	1
TGAAAGTTACTCACAGCACATTGAATAAACGGTATGATGAA	3	42	0
TGAGTAACTTTCACTTCCGTATTTGCATAACGATGTTTTAA	3	70	1
TTAAGCTGATTTACAGCCTGATTATTGTGCGTGAGGCGGCG	3	173	0
          *******    *    *   *
MAP Score: 2.2902

Motif 6
     CCGCTTTCAATCTGTGAGTGATTTCA	1	5	1
TCACAGTATCTTAACAATGTGATAGCTATGA	1	33	1
GGTTACAACGTTAAAACGGTGCAATCATAGC	1	57	0
AATTGTTGTTATGACGCTGTTACCTCGGCAA	1	113	0
ATAACAACAATTAAAGCCGTTTTCTGGAGCG	1	132	1
GGCAGTAGAGTTAATGAAGTGTTACTGAACG	1	205	0
ATGGAAACGGTTACAGCCGTTTTGTTAACGA	2	25	0
TGTGACTCGATTCACGAAGTCCTGTATTCAG	2	59	1
CAATTTCTTCATCATACCGTTTATTCAATGT	3	35	1
CCGTATTTGCATAACGATGTTTTAACATCTG	3	86	1
ATTACAATAATTATCGCTGTGAATACTGGAT	3	136	1
          ******* ***
MAP Score: 2.19831

Motif 7
TTGGGCGCAGTCTATTACTGCGCCCTTATTGTAT	0	16	1
AAAGCCGTTTTCTGGAGCGTTACCGGGCATGGAA	1	144	1
CTTCATTAACTCTACTGCCCCGCCGAGCATTTAT	1	217	1
CGAGCATTTATCTCAAGCACTACCCTGCATAAGA	1	240	1
TGTAACCGTTTCCATTGCTGTGACTCGATTCACG	2	41	1
GAATACTGGATTATGTGCGCCGCCTCACGCACAA	3	156	1
GTAAATCAGCTTAATAACTTTGCCCCCACGCAGG	3	200	1
          **   *** *****
MAP Score: 1.58122