AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID047_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943391431
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	panD	273	aspartate 1-decarboxylase
#1	panB	113	3-methyl-2-oxobutanoate hydroxymethyltransferase

Motif 1
GCTGACGATAGCGCGCCTTGACTGGATACT	0	44	0
GCCATGTATCGCCTGTAACGAATTGATATT	0	109	0
CCGCGCCGAAGCGTGCCATGTATCGCCTGT	0	123	0
GCACGCTTCGGCGCGGTACGCAAACTGCTG	0	137	1
AGCAGGCGATGCCTGCTTTGAGGAAATTCT	0	222	0
AGCAGGCATCGCCTGCTTCGTTAACGACAG	0	235	1
AAGGTGACAGTGCTGCTACGTTA       	1	3	0
CTTCTGGCAGTGCTGCTACGGATAAATCAT	1	30	1
TCACATTGGTGGGGGCAATGATTTATCCGT	1	47	0
          **********
MAP Score: 13.4395

Motif 2
CTGTCACCTTCTGGCAGTGCTGCTACGGAT	1	23	1
AAACAAAAATCGGGCAATACTGCGTGAGAA	0	196	1
GTTAACGAAGCAGGCGATGCCTGCTTTGAG	0	230	0
CAATTCGTTACAGGCGATACATGGCACGCT	0	114	1
GGCACGCTTCGGCGCGGTACGCAAACTGCT	0	136	1
GATAAAATGCCAGACAGCACAACATCAATT	1	79	1
CTGCCAGAAGGTGACAGTGCTGCTACGTTA	1	10	0
CACATTGGTGGGGGCAATGATTTATCCGTA	1	46	0
ATACTGCCTTCACGCAAAGCCACACGGAAG	0	19	0
GCTTTGCGTGAAGGCAGTATCCAGTCAAGG	0	29	1
TATTGTTTACCGAGCAGCGTTCAGAGAAAT	0	82	1
GTCTACTCATCTGACGGCATTTGCGTCAGC	0	163	0
          **********
MAP Score: 10.8678

Motif 3
TCTCTGAACGCTGCTCGGTAAACAATAAAGA	0	78	0
AAATCGGGCAATACTGCGTGAGAATTTCCTC	0	202	1
CAGGCATCGCCTGCTTCGTTAACGACAGGGT	0	237	1
GGTGACAGTGCTGCTACGTTA          	1	0	0
TCTGGCAGTGCTGCTACGGATAAATCATTGC	1	32	1
          ***** *****
MAP Score: 4.27686

Motif 4
          CTTCCCTGTCTTCCGTGTGG	0	0	1
TGACTGGATACTGCCTTCACGCAAAGCCAC	0	26	0
TGACGATAGCGCGCCTTGACTGGATACTGC	0	42	0
GCGCTATCGTCAGCCACCTCTTTATTGTTT	0	60	1
GTTTACCGAGCAGCGTTCAGAGAAATATCA	0	86	1
AATTCTCACGCAGTATTGCCCGATTTTTGT	0	198	0
TTCTACCTTTCTACCCTGTCGTTAACGAAG	0	250	0
  TAACGTAGCAGCACTGTCACCTTCTGGC	1	8	1
TTATCCGTAGCAGCACTGCCAGAAGGTGAC	1	25	0
GGATAAATCATTGCCCCCACCAATGTGACT	1	49	1
TAAATTGATGTTGTGCTGTCTGGCATTTTA	1	81	0
          **********
MAP Score: 2.71174

Motif 5
TGTCTTCCGTGTGGCTTTGCGTGAAGGCAGTAT	0	16	1
CAATTCGTTACAGGCGATACATGGCACGCTTCG	0	114	1
AAACAAAAATCGGGCAATACTGCGTGAGAATTT	0	196	1
TTCCTCAAAGCAGGCATCGCCTGCTTCGTTAAC	0	227	1
CTGTCACCTTCTGGCAGTGCTGCTACGGATAAA	1	23	1
GATAAAATGCCAGACAGCACAACATCAATTTAT	1	79	1
          * **** *** **
MAP Score: 2.66523

Motif 6
CGCAAAGCCACACGGAAGACAGGGAAG      	0	4	0
CTGACGATAGCGCGCCTTGACTGGATACTGCCT	0	40	0
ATTGATATTTCTCTGAACGCTGCTCGGTAAACA	0	85	0
CAATTCGTTACAGGCGATACATGGCACGCTTCG	0	114	1
AAACAAAAATCGGGCAATACTGCGTGAGAATTT	0	196	1
GTTAACGAAGCAGGCGATGCCTGCTTTGAGGAA	0	227	0
TCGTTAACGACAGGGTAGAAAGGTAGAAGTT  	0	252	1
CTGTCACCTTCTGGCAGTGCTGCTACGGATAAA	1	23	1
TGACTGATAAAATGCCAGACAGCACAACATCAA	1	74	1
          * *** **** **
MAP Score: 2.37719