AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID047_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943391661
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	panD	273	aspartate 1-decarboxylase
#1	panB	113	3-methyl-2-oxobutanoate hydroxymethyltransferase
#2	yadC	49	putative fimbrial-like protein
#3	yadK	26	putative fimbrial protein
#4	htrE	34	probable outer membrane porin protein involved in fimbrial assembly
#5	ecpD	97	probable pilin chaperone similar to PapD
#6	yadN	300	putative fimbrial-like protein

Motif 1
CGCAAAGCCACACGGAAGACAGGGAAG   	0	7	0
ATACTGCCTTCACGCAAAGCCACACGGAAG	0	19	0
AGGCAGTATCCAGTCAAGGCGCGCTATCGT	0	40	1
CAATTCGTTACAGGCGATACATGGCACGCT	0	114	1
AAACAAAAATCGGGCAATACTGCGTGAGAA	0	196	1
GTTAACGAAGCAGGCGATGCCTGCTTTGAG	0	230	0
TCGTTAACGACAGGGTAGAAAGGTAGAAGT	0	252	1
         TCAGGCAAGGATATAATTCCG	4	1	1
AATGAATATACAGGGAATAATAATTTCTAT	5	33	1
TTAATTAAAACAGGGAATAATATAAAATAG	5	59	0
          **********
MAP Score: 13.7062

Motif 2
GTTCAGAGAAATATCAATTCGTTACAGGCG	0	100	1
TGCTACGGATAAATCATTGCCCCCACCAAT	1	43	1
          ATATAGTTCCTGAATCTGTA	3	16	0
TCAGGCAAGGATATAATTCCGCAGGAAGCA	4	10	1
AAAATAGAAATTATTATTCCCTGTATATTC	5	36	0
TTTCTATTTTATATTATTCCCTGTTTTAAT	5	56	1
ATAGGAAGTTATATTATTTCCGCAAAGAGA	6	20	0
CTATAAATAAATATCAATCCCATCTCCATA	6	46	1
TGGGTAACAAATATCATTGCTCATTAATAT	6	194	1
AAATCCTTTAATAAAATTCCATTAGTCAGA	6	278	0
          **********
MAP Score: 12.9689

Motif 3
AGTATCCAGTCAAGGCGCGCTATCGTCAGCCA	0	44	1
AATATCAATTCGTTACAGGCGATACATGGCAC	0	109	1
ACAGGCGATACATGGCACGCTTCGGCGCGGTA	0	123	1
CACGCTTCGGCGCGGTACGCAAACTGCTGACG	0	138	1
AGAATTTCCTCAAAGCAGGCATCGCCTGCTTC	0	222	1
CTGTCGTTAACGAAGCAGGCGATGCCTGCTTT	0	233	0
       TAACGTAGCAGCACTGTCACCTTCT	1	3	1
ATGATTTATCCGTAGCAGCACTGCCAGAAGGT	1	28	0
GATATAATTCCGCAGGAAGCATAGC       	4	19	1
TTCTAAAGTGCACAATAGGCGACCTAATGAAC	6	148	1
          ** ******* *
MAP Score: 3.64873

Motif 4
GCAGCACTGTCACCTTCTGGCAGTGCTGCTACGG	1	17	1
ATCAGTCACATTGGTGGGGGCAATGATTTATCCG	1	48	0
CGTGTGGCTTTGCGTGAAGGCAGTATCCAGTCAA	0	23	1
GTTTAAACATCTCTTTGCGGAAATAATATAACTT	6	11	1
  CAGACTTACAGATTCAGGAACTATAT      	3	8	1
AGGCGATGCCTGCTTTGAGGAAATTCTCACGCAG	0	215	0
ATTGATGTTGTGCTGTCTGGCATTTTATCAGTCA	1	74	0
AGTGTCTACTCATCTGACGGCATTTGCGTCAGCA	0	162	0
AAATATCAATTCGTTACAGGCGATACATGGCACG	0	108	1
TGCAATTGGTTAGGGTATGGAGATGGGATTGATA	6	57	0
          * * *** **** *
MAP Score: 2.52325

Motif 5
CAGCGTTCAGAGAAATATCAATTCGTTACAGG	0	96	1
TACAGGGAATAATAATTTCTATTTTATATTAT	5	41	1
CTTCCTATAAATAAATATCAATCCCATCTCCA	6	42	1
AATTTGGGTAACAAATATCATTGCTCATTAAT	6	190	1
ATCATTGCTCATTAATATCTAACATTTGTTTC	6	206	1
AAATCCTTTAATAAAATTCCATTAGTCAGACT	6	276	0
          * ******* **
MAP Score: 1.61291

Motif 6
AGTATCCAGTCAAGGCGCGCTATCGTCAGCC	0	44	1
ACAGGCGATACATGGCACGCTTCGGCGCGGT	0	123	1
TCTCACGCAGTATTGCCCGATTTTTGTTTAG	0	194	0
TCAAAGCAGGCATCGCCTGCTTCGTTAACGA	0	231	1
ACGGATAAATCATTGCCCCCACCAATGTGAC	1	47	1
TTAGGTCGCCTATTGTGCACTTTAGAAGCTT	6	144	0
AATTTACAACCATTGTTCATTAGGTCGCCTA	6	163	0
TAACAAATATCATTGCTCATTAATATCTAAC	6	198	1
          ****** ****
MAP Score: 1.4738

Motif 7
CTGCCTTCACGCAAAGCCACACGGAAGACAG	0	15	0
TTCTCACGCAGTATTGCCCGATTTTTGTTTA	0	195	0
AACGAAGCAGGCGATGCCTGCTTTGAGGAAA	0	226	0
TAACGTAGCAGCACTGTCACCTTCTGGCAGT	1	10	1
ATCCGTAGCAGCACTGCCAGAAGGTGACAGT	1	22	0
TACGGATAAATCATTGCCCCCACCAATGTGA	1	46	1
          *** *******
MAP Score: 0.693349