AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID050_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943391445
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	xylF	300	xylose binding protein transport system
#1	xylG	77	putative ATP-binding protein of xylose transport system

Motif 1
CACTGCTATTGAGATAATTCACAAGTGTGC	0	35	1
ATTCCTCGAAGAGAAAAATGCAATAAGTAC	0	104	1
TAAGATCTCGGTCATAAATCAAGAAATAAA	0	150	1
CATAAATCAAGAAATAAACCAAAAATCGTA	0	162	1
GTAATCGAAAGATAAAAATCTGTAATTGTT	0	189	1
AACAATCACCGCGATAAACGTAACCAATTT	0	239	0
ACGCGGCATGGAGAGAAATCACGCCCCCGC	1	30	0
          **********
MAP Score: 5.10257

Motif 2
AATTATCTCAATAGCAGTGTGAAATAACATAATT	0	20	0
TGTGCGCTCGCTCGCAAAATAAAATGGAATGATG	0	60	1
GCAAAATAAAATGGAATGATGAAACTGGGTAATT	0	73	1
TGGGTAATTCCTCGAAGAGAAAAATGCAATAAGT	0	98	1
AATAAGTACAATTGCGCAACAAAAGTAAGATCTC	0	125	1
AAAAATCGTAATCGAAAGATAAAAATCTGTAATT	0	182	1
          ** ***  * ****
MAP Score: 3.62421

Motif 3
GCTCAATTATGTTATTTCACACTGCTATTG	0	16	1
GCGCACACTTGTGAATTATCTCAATAGCAG	0	37	0
ATGAAACTGGGTAATTCCTCGAAGAGAAAA	0	91	1
CGCAACAAAAGTAAGATCTCGGTCATAAAT	0	139	1
GAGCGGGGGCGTGATTTCTCTCCATGCCGC	1	28	1
          **********
MAP Score: 2.03374