AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID052_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943391477
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	yabB	300	orf, hypothetical protein
#1	murC	53	L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
#2	ftsZ	60	cell division; forms circumferential ring; tubulin-like GTP-binding protein and GTPase
#3	ddlA	300	D-alanine-D-alanine ligase A
#4	murB	300	UDP-N-acetylenolpyruvoylglucosamine reductase

Motif 1
ACCTCGGTATGCCTTGTGACTGGCTTGACAAGCTTTT	0	205	1
TTGTAGCGATGCCTTTTGCATCGTATGAATTTAAGAA	1	10	1
GGCTTAAATGGCCATGCGGTGAGTTTTTTTCTCTTAA	3	84	0
GGGATTCGCGGCCTTCTGAAAGATTGTTGCAATCTTC	3	219	0
TTTCGACTGAGCCTTTCGTTTTATTTG          	4	0	0
GAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCG	4	33	1
CGTCAGGATGGCCTTCTGCTTAATTTGATGCCTGGCA	4	168	0
ACGCAAAAAGGCCATCCGTCAGGATGGCCTTCTGCTT	4	184	0
          ***** **    *  **
MAP Score: 14.4211

Motif 2
AAAATGCCGCTCGCGTCGCAAACTGACACTTTAT	0	26	1
AATCCCTCATCGTCATCACCGTTTTAAAATGACT	0	80	0
TAACGTTAATTTGCTTCGCACGTTGGACGTAAAA	0	132	1
GCCTTGTGACTGGCTTGACAAGCTTTTCCTCAGC	0	215	1
AGCTTTTCCTCAGCTCCGTAAACTCCTTTCAGTG	0	235	1
TATTCCCACTTTGCCCCACAATTTCCCACTGAAA	0	261	0
        GCCAGCCTCACCCCTTATTCCCACTT	0	284	0
AAAAAACTCACCGCATGGCCATTTAAGCCAGGAA	3	92	1
AAAACGGGGGATTCGCGGCCTTCTGAAAGATTGT	3	229	0
CTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGC	4	106	0
GGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTT	4	128	0
GCTTAATTTGATGCCTGGCAGTTTATGGCGGGCG	4	154	0
GGCCATCCGTCAGGATGGCCTTCTGCTTAATTTG	4	178	0
GGCCATCCTGACGGATGGCCTTTTTGCGTTTCTA	4	192	1
          * ** *****  **
MAP Score: 11.9158

Motif 3
CTGGCTTGACAAGCTTTTCCTCAGCTCCGTAAAC	0	224	1
ACGGGAAGCTAATTTATTCCTGGCTTAAATGGCC	3	108	0
AGATTGTTGCAATCTTCTGCTGACAAAGCGTGCA	3	202	0
     CTTAAAAACCTATCCCGTCTAACACAAAG	3	281	0
TTTGTCGGTGAACGCTCTCCTGAGTAGGACAAAT	4	63	1
GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC	4	89	0
AATTAAGCAGAAGGCCATCCTGACGGATGGCCTT	4	180	1
GCGTTTCTACAAACTCTTCCTGTCGTCATATCTA	4	217	1
GTCATATCTACAAGCCATCCCCCCACAGATACGG	4	241	1
          ** **  ***** *
MAP Score: 11.394

Motif 4
ATGTCCTAAAATGCCGCTCGCGTCGCAAACTGACACTTTA	0	19	1
TTACCTCGGTATGCCTTGTGACTGGCTTGACAAGCTTTTC	0	203	1
  TTGTAGCGATGCCTTTTGCATCGTATGAATTTAAGAAG	1	8	1
CTGTCGCCTGAGGCCGTAATCATCGTCGGCCTCATAAAAA	2	10	0
ATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTT	4	17	0
TCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAAC	4	78	1
TGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCG	4	120	1
ATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGT	4	181	1
          *****       ***   **
MAP Score: 11.0752

Motif 5
AAGCAACGGCCCGGAGGGTGGCGGGCAGGACG	4	124	1
ACCGTATCTGTGGGGGGATGGCTTGTAGATAT	4	244	0
GGGAATAAGGGGTGAGGCTGGC          	0	288	1
CTCGGTATGCCTTGTGACTGGCTTGACAAGCT	0	207	1
GAAGGCCATCCTGACGGATGGCCTTTTTGCGT	4	189	1
ATTACGGCCTCAGGCGACAGGCACAAATCGGA	2	30	1
TCTGCTTAATTTGATGCCTGGCAGTTTATGGC	4	159	0
TGCCTGGCAGTTTATGGCGGGCGTCCTGCCCG	4	145	0
GGGAAGCTAATTTATTCCTGGCTTAAATGGCC	3	108	0
          * ** *******
MAP Score: 7.45271

Motif 6
       TTTTTATGAGGCCGACGATGATT	2	3	1
TGTGCCTGTCGCCTGAGGCCGTAATCATCG	2	25	0
CAACAATCTTTCAGAAGGCCGCGAATCCCC	3	227	1
GGACAAATCCGCCGGGAGCGGATTTGAACG	4	89	1
AGGGTGGCGGGCAGGACGCCCGCCATAAAC	4	138	1
ATCAAATTAAGCAGAAGGCCATCCTGACGG	4	176	1
          **********
MAP Score: 2.061

Motif 7
GTCCTAAAATGCCGCTCGCGTCGCAAACTG	0	21	1
GACAAGCTTTTCCTCAGCTCCGTAAACTCC	0	231	1
      GCCAGCCTCACCCCTTATTCCCAC	0	286	0
TGTGCCTGTCGCCTGAGGCCGTAATCATCG	2	25	0
CAACAATCTTTCAGAAGGCCGCGAATCCCC	3	227	1
   CTTAAAAACCTATCCCGTCTAACACAA	3	283	0
AACGTTCAAATCCGCTCCCGGCGGATTTGT	4	91	0
AGGGTGGCGGGCAGGACGCCCGCCATAAAC	4	138	1
ATCAAATTAAGCAGAAGGCCATCCTGACGG	4	176	1
TACAAACTCTTCCTGTCGTCATATCTACAA	4	224	1
          **********
MAP Score: 1.94985

Motif 8
TCCCTCATCGTCATCACCGTTTTAAAATGAC	0	81	0
GAGGGATTTTTTCTTACAGCTATTCATAACG	0	106	1
ACCTCGGTATGCCTTGTGACTGGCTTGACAA	0	205	1
CTCCGTAAACTCCTTTCAGTGGGAAATTGTG	0	248	1
TTCCCACTTTGCCCCACAATTTCCCACTGAA	0	262	0
      GCCAGCCTCACCCCTTATTCCCACT	0	285	0
TCCGATTTGTGCCTGTCGCCTGAGGCCGTAA	2	31	0
TTTCGACTGAGCCTTTCGTTTTATTTG    	4	6	0
GAAAGGCCCAGTCTTTCGACTGAGCCTTTCG	4	19	0
GAAAGACTGGGCCTTTCGTTTTATCTGTTGT	4	33	1
TCAAATCCGCTCCCGGCGGATTTGTCCTACT	4	85	0
CCCGCCACCCTCCGGGCCGTTGCTTCGCAAC	4	118	0
ATGGCGGGCGTCCTGCCCGCCACCCTCCGGG	4	133	0
TTAATTTGATGCCTGGCAGTTTATGGCGGGC	4	155	0
CGTCAGGATGGCCTTCTGCTTAATTTGATGC	4	174	0
CAGAAGGCCATCCTGACGGATGGCCTTTTTG	4	187	1
          ***** *****
MAP Score: 0.596824

Motif 9
ATGTCCTAAAATGCCGCTCGCGTCGCAAACTGACA	0	19	1
ACGCTGATATTAGCCGTAAACATCGGGTTTTTTAC	0	172	1
CTGTCGCCTGAGGCCGTAATCATCGTCGGCCTCAT	2	15	0
ATCTTTCAGAAGGCCGCGAATCCCCCGTTTTGTCG	3	232	1
GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCT	4	88	0
          * ***** * *  **
MAP Score: 0.30065