AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID053_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943391748
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	tbpA	163	thiamin-binding periplasmic protein
#1	yabN	300	putative transport protein

Motif 1
ATGAAGCAAGGGGGTGCCCCATGCGTCAGT	1	212	0
CGTTCTCAACGGGGTGCCACGCGTACGCGT	0	44	1
CTTTTGCACAGGAGTTCCCCTTTT      	1	286	1
CAGAATTGCGGTCATCCCACTGCATCAGTC	1	98	1
GCGTTGGTTAAGCGTCCCACAACGATTAAC	1	139	0
TCCCTTCGCCGGCGTTATCCGGATCAGGTT	0	95	0
          **********
MAP Score: 5.28573

Motif 2
GTAGTGATTTTGTTATCAACCAGCAA    	0	6	0
ACACTAACGCCGTTCTCAACGGGGTGCCAC	0	34	1
TCGACGGGTATTTTCTCAGCGCACGCGTAC	0	66	0
CCTTCGCCGGCGTTATCCGGATCAGGTTCG	0	93	0
GCCTCAAATCCCTTCGCCGGCGTTATCCGG	0	103	0
ATTTGAGGCTCCTTCTCAAGTCCTTTGCCA	0	124	1
CTTCTCAAGTCCTTTGCCACTCTTTTTTGA	0	135	1
TTTGCCACTCTTTTTTGAGGTGCAAA    	0	147	1
CATGCGTCAGTTTTATCAGCACTATTTTAC	1	193	0
AAAATTGCTGTCTTTTGCACAGGAGTTCCC	1	275	1
          **********
MAP Score: 5.19079

Motif 3
CCTCAAATCCCTTCGCCGGCGTTATCCGGA	0	102	0
AGCAGATTATACCTGCTGGTTTTTTTTATT	1	13	0
AGCAGGTATAATCTGCTGGCGGGTGATTTT	1	26	1
CTGAAAGTTGACTTGCCTGCATCATGTGTG	1	71	0
CAACTTTCAGAATTGCGGTCATCCCACTGC	1	91	1
ACCAGCACAACTTCGCTGTCGCGGTAAAAT	1	170	1
GGGAAAATAAAATTGCTGTCTTTTGCACAG	1	267	1
          **********
MAP Score: 4.00906

Motif 4
ATTTTCTCAGCGCACGCGTACGCGTGGCACC	0	56	0
AAAGTTGACTTGCCTGCATCATGTGTGACTG	1	67	0
TGCGGTCATCCCACTGCATCAGTCCTTCAAG	1	104	1
ACAACGATTAACCATGCTTGAAGGACTGATG	1	120	0
GGACGCTTAACCAACGCAACCAGCACAACTT	1	152	1
AAGGGGGTGCCCCATGCGTCAGTTTTATCAG	1	204	0
ATGGGGCACCCCCTTGCTTCATCGTTAGGAA	1	220	1
          ******* ***
MAP Score: 2.62282

Motif 5
GCACGCGTACGCGTGGCACCCCGTTGAGAACG	0	44	0
GAGAAAATACCCGTCGAACCTGATCCGGATAA	0	79	1
CCTCAAAAAAGAGTGGCAAAGGACTTGAGAAG	0	135	0
CACCAATACTCAGTCACACATGATGCAGGCAA	1	57	1
TTCAGAATTGCGGTCATCCCACTGCATCAGTC	1	96	1
CCCACTGCATCAGTCCTTCAAGCATGGTTAAT	1	113	1
CGTTGGTTAAGCGTCCCACAACGATTAACCAT	1	136	0
TGAAGCAAGGGGGTGCCCCATGCGTCAGTTTT	1	209	0
          * ******** *
MAP Score: 1.75473