AlignACE 3.0 10/20/99 AlignACE2 -i WIT_ctrl_PID067_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 943391608 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 leuA 92 2-isopropylmalate synthase #1 leuL 300 leu operon leader peptide #2 ilvI 227 acetolactate synthase III, valine sensitive, large subunit #3 acnB 300 aconitate hydrase B #4 yeaU 81 putative tartrate dehydrogenase #5 ilvB 105 acetolactate synthase I,valine-sensitive, large subunit #6 ilvM 300 acetolactate synthase II, valine insensitive, small subunit #7 ilvD 95 dihydroxyacid dehydratase #8 ilvC 149 ketol-acid reductoisomerase Motif 1 GTCAAACAAAAAACCCGCGCCATTGCGCGGG 0 21 1 GGGCATAAAAAAACCCGCGCAATGGCGCGGG 0 34 0 TCGCTTACTTTAACCACCGCAGCACAATTAG 1 162 1 ACGCAATAAAAACGTCCCGCCAGCGTGAGTT 1 211 0 TAAATCAGCTCCAGATGAATGC 1 288 0 GTCAAAATTTAAACTACCGCCTCTTTATACT 3 19 0 GAAAAGGAATTAATCCCCGTAACTG 4 4 0 ACACGATTCCAAAACCCCGCCGGCGCAAACC 5 23 1 GCTTAAACGAAAAACCCCGCCCGGTTTGCGC 5 45 0 GTTTTTCGTTTAAGCACCTCCCGGAAAGTCG 5 61 1 TTCCTCATGTTAGCCAGCGCCTTCGGCATCC 6 116 1 *** ******* MAP Score: 16.9039 Motif 2 GCGCAATGGCGCGGGTTTTTTGTTTGACTGC 0 18 0 CGCAAACCGGGCGGGGTTTTTCGTTTAAGCA 5 46 1 GCGCCATTGCGCGGGTTTTTTTATGCCCGAA 0 37 1 GTTTGCGCCGGCGGGGTTTTGGAATCGTGTG 5 22 0 GGGCAGAATAGCAGGATTTTGACGAGGTGTT 3 181 0 GTTTTGCAACGCGTGCATTTTGTCCCCTTTT 1 51 1 ACTCACGCTGGCGGGACGTTTTTATTGCGTC 1 212 1 ***** ***** MAP Score: 12.7719 Motif 3 CTTAAACGAAAAACCCCGCCCGGTTTGCGCCG 5 43 0 TTTTTCGTTTAAGCACCTCCCGGAAAGTCGGC 5 62 1 AAAAATGGGACGGCACGCACCGTCCCATTTAC 7 15 1 TCAATCTCGCAAACGCGAACCGAACAATAAGA 8 103 1 GCGTGAAGAGAATCGCCTGCCGCACTATGACA 3 257 1 TCATGTTAGCCAGCGCCTTCGGCATCCATGGC 6 120 1 CACGATTCCAAAACCCCGCCGGCGCAAACCGG 5 24 1 TGGCGCCAGGCGGCACCAGCGGCCAGACGTTC 6 250 0 TCCTGCTATTCTGCCCGTTGCGGTACTGGGCA 3 196 1 ATTGTCGAACCATCCCTAACCGTTGGTTATCG 6 25 0 AAATTGACAACATCACCATCCTATAATTGACT 4 35 0 GGGTTTTTTTATGCCCGAAGCGAGGCGCTCTA 0 49 1 GTCAAACAAAAAACCCGCGCCATTGCGCGGGT 0 21 1 CTGACGCAATAAAAACGTCCCGCCAGCGTGAG 1 213 0 AGTATGCCTAAGTACCGTTCCGCCACCACCAC 7 71 1 AGGCGATTCTCTTCACGCTCCTGTGAGACAGC 3 243 0 AAGCGGCACTCGACACCATGCTGAACAGTGAT 6 180 1 AACGATACAGCGAAACCACCCTTACTGATAAC 6 78 1 ******* *** MAP Score: 11.6068 Motif 4 CGTTGATTAGATGCAAAAATTTATGCTGAA 1 86 1 GCAAAAATTTATGCTGAAATATGTCAACCG 1 98 1 GTCGGTAGTTAAGCAGAAATTAATATCGCT 1 137 1 AATTTTACGGATGCAGAACTCACGCTGGCG 1 195 1 CTGATTGCAGAATAGGTCAGACAT 2 4 1 TCAATAAAAAATGCAGAATAAACCAGACAT 2 36 0 TTTTTATTGAATGTAGAATTTTATTCTGAA 2 56 1 GAGCCCACACATTCAGAATAAAATTCTACA 2 67 0 ACTCGACACCATGCTGAACAGTGATGGGCC 6 187 1 GGCGCCAGTAATTCAGAAATGTTGGAGAAA 6 275 1 TTCAGAAATGTTGGAGAAATTATC 6 286 1 GATGTTGACGTTGCAAAAATTGCAATGTGA 8 23 1 AGGAAATTTATTGCGGAAATTGATATATTC 8 59 0 ********** MAP Score: 9.15247 Motif 5 ATACAAAAAATGGGACGGCACGCACCGTCC 7 6 1 CAGTCAAACAAAAAACCCGCGCCATTGCGCGGGT 0 19 1 TCGGGCATAAAAAAACCCGCGCAATGGCGCGGGT 0 33 0 CCCGCCGGCGCAAACCGGGCGGGGTTTTTCGTTT 5 38 1 TGACGCAATAAAAACGTCCCGCCAGCGTGAGTTC 1 210 0 CCATGGCCAACACATCACCCGGAAAGACCAGGTT 6 145 1 GTCAACCGATGAAAAGCGTCGGTAGTTAAGCAGA 1 120 1 GAATCCGAGTATAAAGAGGCGGTAGTTTAAATTT 3 12 1 CACGATTCCAAAACCCCGCCGGCGCAAACCGGGC 5 24 1 AAACGGATGTCAACCCTGACGCAATAAAAACGTC 1 226 0 TTTTCGTTTAAGCACCTCCCGGAAAGTCGGCCCA 5 63 1 AAGCAACATAAAAAAGTGGCTGAATCGTTAAGGA 3 132 0 GTCTGTCTCGTAAATGGGACGGTGCGTGCCGTCC 7 22 0 TAAGAAGCACAACATCACGAGGAATCACC 8 130 1 GGTAATAAGAATAAACAGGAGGAAAGGTGAAAAG 2 201 0 TCGTTCCTGAAAAAACAGTTGCTGCCATTGTCGA 6 49 0 **** * * *** * MAP Score: 9.11202 Motif 6 CCGATGAAAAGCGTCGGTAGTTAAGCAGAAA 1 125 1 AGCTAATTGTGCTGCGGTGGTTAAAGTAAGC 1 164 0 AGAACTCACGCTGGCGGGACGTTTTTATTGC 1 209 1 CGAGTATAAAGAGGCGGTAGTTTAAATTTTG 3 17 1 TATTCTGCCCGTTGCGGTACTGGGCATTTAC 3 202 1 AAGAGAATCGCCTGCCGCACTATGACAATGA 3 262 1 CCGGTTTGCGCCGGCGGGGTTTTGGAATCGT 5 25 0 CGGCGCAAACCGGGCGGGGTTTTTCGTTTAA 5 43 1 GCCGACTTTCCGGGAGGTGCTTAAACGAAAA 5 63 0 GCCATGGATGCCGAAGGCGCTGGCTAACATG 6 121 0 AGACCAGGTTGAAGCGGCACTCGACACCATG 6 169 1 TTACTGGCGCCAGGCGGCACCAGCGGCCAGA 6 255 0 TACAAAAAATGGGACGGCACGCACCGTCCCA 7 11 1 GAGTGGTGGTGGCGGAACGGTACTTAGGC 7 76 0 * ********* MAP Score: 8.94707 Motif 7 TAAAAAAACCCGCGCAATGGCGCGGGTTTTTTGTTTGACTG 0 19 0 ATATGTCAACCGATGAAAAGCGTCGGTAGTTAAGCAGAAAT 1 116 1 CGTAAAATTAGCTAATTGTGCTGCGGTGGTTAAAGTAAGCG 1 163 0 GTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGA 3 8 1 ACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATG 3 48 1 ATTCTCTTCACGCTCCTGTGAGACAGCAGTTTGTAGGGTAA 3 229 0 TCGCTCTCATTGTCATAGTGCGGCAGGCGATTCTCTTCACG 3 258 0 TTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCC 5 10 0 AAACCCCGCCGGCGCAAACCGGGCGGGGTTTTTCGTTTAAG 5 34 1 GAGGAAATCGGGGTTATCAGTAAGGGTGGTTTCGCTGTATC 6 81 0 GCTTCAACCTGGTCTTTCCGGGTGATGTGTTGGCCATGGAT 6 143 0 TGGCGCCAGGCGGCACCAGCGGCCAGACGTTCTCAAGTTCG 6 241 0 CTCGTAAATGGGACGGTGCGTGCCGTCCCATTTTTTGTAT 7 9 0 GAGTGGTGGTGGCGGAACGGTACTTAGGCATACTT 7 70 0 ** * * *** *** MAP Score: 6.09096 Motif 8 TCTGTAATGGAGGATTTTATCGTTTCTTTTCACC 2 176 1 TGAATCGTTAAGGATGGTCTAGAGATTGTTTCCC 3 112 0 GCAGAATAGCAGGATTTTGACGAGGTGTTAATCT 3 176 0 CCTGTGAGACAGCAGTTTGTAGGGTAAATGCCCA 3 222 0 GCTGTCTCACAGGAGCGTGAAGAGAATCGCCTGC 3 243 1 AGTCAATTATAGGATGGTGATGTTGTCAATTTTG 4 35 1 ACCCGGAAAGACCAGGTTGAAGCGGCACTCGACA 6 161 1 ATCACTGTTCAGCATGGTGTCGAGTGCCGCTTCA 6 178 0 GGGACAGCCCTCGATGTTGACGTTGCAAAAATTG 8 11 1 TTGCAAAAATTGCAATGTGACGTTGTGAATATAT 8 33 1 **** **** * * MAP Score: 5.52643 Motif 9 GTCAAACAAAAAACCCGCGCCATTGCGCGGG 0 21 1 GGGCATAAAAAAACCCGCGCAATGGCGCGGG 0 34 0 CTTACTTTAACCACCGCAGCACAATTAGCTA 1 165 1 ACGCAATAAAAACGTCCCGCCAGCGTGAGTT 1 211 0 ACGGATGTCAACCCTGACGCAATAAAAACGT 1 227 0 GTCAAAATTTAAACTACCGCCTCTTTATACT 3 19 0 GGGTAAATGCCCAGTACCGCAACGGGCAGAA 3 204 0 TGAAGAGAATCGCCTGCCGCACTATGACAAT 3 260 1 TTCCAAAACCCCGCCGGCGCAAACCGGGCGG 5 29 1 TTCGTTTAAGCACCTCCCGGAAAGTCGGCCC 5 65 1 TGTTAGCCAGCGCCTTCGGCATCCATGGCCA 6 123 1 AGCATGGTGTCGAGTGCCGCTTCAACCTGGT 6 171 0 CGCCAGGCGGCACCAGCGGCCAGACGTTCTC 6 248 0 CCGCTGGTGCCGCCTGGCGCCAGTAATTCAG 6 260 1 AATGGGACGGTGCGTGCCGTCCCATTTTTTG 7 13 0 ATGCCTAAGTACCGTTCCGCCACCACCACTC 7 74 1 ***** ***** MAP Score: 3.95906 Motif 10 GCGCCATTGCGCGGGTTTTTTTATGCCCGAAGCGAGGCG 0 37 1 TAATTGTGCTGCGGTGGTTAAAGTAAGCGATATTAATTT 1 153 0 AGCACAATTAGCTAATTTTACGGATGCAGAACTCACGCT 1 182 1 ACGCTGGCGGGACGTTTTTATTGCGTCAGGGTTGACATC 1 216 1 ATGAATGCGATATGCTTTTAGAGTTACTGGATACAAAAA 1 257 0 GGTTTATTCTGCATTTTTTATTGAATGTAGAATTTTATT 2 42 1 CTCTGTAATGGAGGATTTTATCGTTTCTTTTCACCTTTC 2 175 1 GCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTA 3 88 1 CTGTGAGACAGCAGTTTGTAGGGTAAATGCCCAGTACCG 3 216 0 GTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCA 5 14 0 CGCAAACCGGGCGGGGTTTTTCGTTTAAGCACCTCCCGG 5 46 1 TTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAA 5 65 0 AATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAA 6 54 1 ACGTCACATTGCAATTTTTGCAACGTCAACATCGAGGGC 8 17 0 ** * **** * * * MAP Score: 2.58329 Motif 11 GTCGGTAGTTAAGCAGAAATTAATATCGCTTACTTTAACCACC 1 137 1 AATTTTACGGATGCAGAACTCACGCTGGCGGGACGTTTTTATT 1 195 1 GAGCCCACACATTCAGAATAAAATTCTACATTCAATAAAAAAT 2 54 0 TTTTTAATTAATCCTAAAATAGAGAGCCCACACATTCAGAATA 2 77 0 GTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTT 3 3 1 ACAACACACGATTCCAAAACCCCGCCGGCGCAAACCGGGCGGG 5 18 1 CGCTGTATCGTTCCTGAAAAAACAGTTGCTGCCATTGTCGAAC 6 47 0 ACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCAT 6 187 1 TTCTCCAACATTTCTGAATTACTGGCGCCAGGCGGCACCAGCG 6 261 0 ATACAAAAAATGGGACGGCACGCACCGTCCCAT 7 0 1 TTCCTGTCATATAGTGAATTCAATCTCGCAAACGCGAACCGAA 8 84 1 ** * *** *** * MAP Score: 2.13666 Motif 12 GCAGTCAAACAAAAAACCCGCGCCATTGCGCG 0 18 1 TTCGGGCATAAAAAAACCCGCGCAATGGCGCG 0 36 0 GTCTCTTTTAGAGCGCCTCGCTTCGGGCATAA 0 57 0 TTTTACGGATGCAGAACTCACGCTGGCGGGAC 1 197 1 GGACTGGAACAACACACGATTCCAAAAC 5 6 1 TGCTTAAACGAAAAACCCCGCCCGGTTTGCGC 5 45 0 TTTTTCGTTTAAGCACCTCCCGGAAAGTCGGC 5 62 1 TCCATGGCCAACACATCACCCGGAAAGACCAG 6 144 1 GACCAGGTTGAAGCGGCACTCGACACCATGCT 6 170 1 TACTGGCGCCAGGCGGCACCAGCGGCCAGACG 6 253 0 ACAAAAAATGGGACGGCACGCACCGTCCCATT 7 12 1 AGGGACAGCCCTCGATGTTGACGT 8 2 1 ***** *** ** MAP Score: 1.07886