AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID072_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943391920
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	yceD	159	orf, hypothetical protein
#1	rpmF	51	50S ribosomal subunit protein L32
#2	plsX	110	glycerolphosphate auxotrophy in plsB background
#3	fabH	67	3-oxoacyl-[acyl-carrier-protein] synthase III; acetylCoA ACP transacylase
#4	acpP	210	acyl carrier protein
#5	fabF	87	3-oxoacyl-[acyl-carrier-protein] synthase II
#6	pabC	119	4-amino-4-deoxychorismate lyase

Motif 1
TGCGAATTATTGGCAAAAGGCAACCACAGGC	0	89	1
CCGTTGGATCGGGGATAAACCGTAATTGAGG	1	20	1
CCGTAATTGAGGAGTAAGGTCC         	1	39	1
CCAGTTGCCTGGGGAAAATCCTCACTAAGCT	2	29	0
CCAGGCAACTGGGGAAAGACCAAACCGGGCG	2	48	1
TGAGCATTTTGTGCAAATCGCGG        	4	2	0
GTAATAATTAGTGCAAAATGATTTGCGTTAT	4	60	1
GCGTTATTGGGGGGTAAGGCCTCAAAATAAC	4	84	1
ACGTAAAATCGTGGTAAGACCTGCCGGGATT	4	113	1
GATTCTAGTGGGACAAAAAGATAAAACTCAG	5	40	0
CTCCAGGGAGGGAAAAAATGATTCTAGTGGG	5	59	0
TTTTATAAGGGTGGAAAATGACAAC      	6	4	0
GGAACAAGTCGGAATAAAAGCTAAGAAAAAA	6	51	0
          ******** **
MAP Score: 12.4432

Motif 2
AAAAGGCAACCACAGGCTGCCTTTTTCTTTG	0	103	1
AAAGATAAAACTCAGGCGGTCGAACGACCGC	5	24	0
CTCATAACCACGCAGACTGCGCGCAACATGA	4	30	0
TTCCGTAGTGAACATGCTGCCACACTAACAA	6	78	1
GAAAGACCAAACCGGGCGGCGACGATACCTT	2	61	1
 GTGAACATCTCCAGGCGGTCGTTCGACCGC	5	9	1
AAAAAAGGCCCGCAAGCGGACCTTTTATAAG	6	26	0
GCACAAAATGCTCATGTTGCGCGCAGTCTGC	4	19	1
ACTGCGAGTTCGCTGGCAGCGTCCTG     	3	5	0
TTTGGTCTTTCCCCAGTTGCCTGGGGAAAAT	2	41	0
TACCGTCACTTGCAAACTGCGAGTTCGCTGG	3	20	0
CAATAATTCGCACACATTGCGGGTTACTGCT	0	70	0
          * *********
MAP Score: 10.5565

Motif 3
AAAAGGCAACCACAGGCTGCCTTTTTCTTTG	0	103	1
GAAAGACCAAACCGGGCGGCGACGATACCTT	2	61	1
ACACGTCTAACCCTGGCGTTAGATGTC    	2	93	1
GCAACTAAATCCCGGCAGGTCTTACCACGAT	4	120	0
 GTGAACATCTCCAGGCGGTCGTTCGACCGC	5	9	1
AAAGATAAAACTCAGGCGGTCGAACGACCGC	5	24	0
TTTTTTCCCTCCCTGGAGGACAAAC      	5	72	1
ATAAAAGGTCCGCTTGCGGGCCTTTTTTCTT	6	29	1
          ********* *
MAP Score: 5.80093

Motif 4
TGCGCTTCGTTTTGCAGGTTGATGTTTGTTA	0	19	1
AAAGCAGTAACCCGCAATGTGTGCGAATTAT	0	68	1
    TTGGTGCTCCCCGTTGGATCGGGGATA	1	6	1
GGTTTGGTCTTTCCCCAGTTGCCTGGGGAAA	2	43	0
GTATCGTCGCCGCCCGGTTTGGTCTTTCCCC	2	58	0
AAACTGCGAGTTCGCTGGCAGCGTCCTG   	3	7	0
TGCCAGCGAACTCGCAGTTTGCAAGTGACGG	3	18	1
ACGCAGACTGCGCGCAACATGAGCATTTTGT	4	21	0
TACTCATAACCACGCAGACTGCGCGCAACAT	4	32	0
   GTGAACATCTCCAGGCGGTCGTTCGACC	5	7	1
CATTTTTTCCCTCCCTGGAGGACAAAC    	5	70	1
AGAAAAAAGGCCCGCAAGCGGACCTTTTATA	6	28	0
          ******** **
MAP Score: 3.47845

Motif 5
TTATTGGCAAAAGGCAACCACAGGCTGCCT	0	95	1
GGATTTTCCCCAGGCAACTGGGGAAAGACC	2	39	1
AAGACCAAACCGGGCGGCGACGATACCTTG	2	63	1
       CAGGACGCTGCCAGCGAACTCGC	3	3	1
TGAACATCTCCAGGCGGTCGTTCGACCGCC	5	11	1
AGATAAAACTCAGGCGGTCGAACGACCGCC	5	23	0
CCGTAGTGAACATGCTGCCACACTAACAAT	6	80	1
          **********
MAP Score: 0.00901368