AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID100_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943391826
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	dnaX	128	DNA polymerase III, tau and gamma subunits; DNA elongation factor III
#1	ybaB	52	orf, hypothetical protein

Motif 1
TCTTGTGCTGCCCACGCTACGGACAGCACA	0	20	1
AAGATGTGCATTCAGCCTCGCCGTTCTGAC	0	49	1
GTAATGCTAACACAGCCCCGTCAGAACGGC	0	68	0
GTGTTAGCATTACCCCTTCGTGAATCCACC	0	85	1
CCTTCGTGAATCCACCTTCCAGCGTTTCAG	0	99	1
TCCAGCGTTTCAGAGCCTGCCA        	0	116	1
   TCGTAAGCACAGCTTACGTTCGTCATC	1	7	1
          **********
MAP Score: 4.21615