AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID182_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943393223
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	napF	300	ferredoxin-type protein: electron transfer

Motif 1
TGTTAAATTCTAATGAGAGAGCAAACCAGCAGAAA	0	35	1
TATAACCATTTGAAATGTGAGCAAAAGCCCGTTTT	0	105	1
AAGAGTGGCGGGAAGCGTGGCAAAAACGGGCTTTT	0	127	0
GGGTAAAACCTGTAGCAGGATCAAAAGAGTGGCGG	0	151	0
GCTCTGAAAATTGAGAGCGACCAAATAAACCGCAT	0	253	0
AGCGCGTTAATGATGGAAGGTCAAT          	0	285	1
          *  ** * ** ****
MAP Score: 2.95418

Motif 2
ATATTTCTGCTGGTTTGCTCTCTCATTAGA	0	43	0
GCAAAAACGGGCTTTTGCTCACATTTCAAA	0	113	0
GCAAAAGCCCGTTTTTGCCACGCTTCCCGC	0	125	1
TTCCCGCCACTCTTTTGATCCTGCTACAGG	0	148	1
TCCTGCTACAGGTTTTACCCCGATCGGGGT	0	166	1
          **********
MAP Score: 1.68866