AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID191_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943392774
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	yrbG	209	orf, hypothetical protein
#1	rpoN	47	RNA polymerase, sigma(54 or 60) factor; nitrogen and fermentation regulation

Motif 1
        AATTCACCCTTCGTCTTGCGTTG	0	2	1
TTTACAGAATATTACCCGCCGTGGTTAGCGA	0	76	1
TGTTTTACTTTTTAGCCGCATAAAGTCAAAA	0	118	1
AAAGTCAAAATTAAGCATCCGTTACGGCTTT	0	139	1
TTTCTTCAGGTATACTCGCCGGTCCGCTGAA	0	179	0
TTTGCGACGTTTTAGCAGGAGAGTACGATTC	1	21	1
          ** ********
MAP Score: 2.14819