AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID208_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943392822
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	fdoG	193	formate dehydrogenase-O, major subunit

Motif 1
CAGATAAGAACACACACACCAACATTATGGTAT	0	21	1
CTGTTACAAACCCTTCCTGGATGGAGGGAAATT	0	55	1
GGCTCAATTTCCCTCCATCCAGGAAGGGTTTGT	0	60	0
CCTTTGCGGCCCCTTCCGCAAAGAAAAATAACT	0	102	1
AAATAACTCCCACTCCCTGCACACGCAGCAAGC	0	127	1
CATTTACATTCGCTTGCTGCGTGTGCAGGGAGT	0	138	0
          * ***** *** *
MAP Score: 2.7247

Motif 2
CCAGATAAGAACACACACACCAACATTATGGTATT	0	20	1
GTATTCTGTTACAAACCCTTCCTGGATGGAGGGAA	0	50	1
TCCAGAATTGGCTCAATTTCCCTCCATCCAGGAAG	0	67	0
CTGGACCTTTGCGGCCCCTTCCGCAAAGAAAAATA	0	97	1
AAGAAAAATAACTCCCACTCCCTGCACACGCAGCA	0	122	1
CCCACTCCCTGCACACGCAGCAAGCGAATGTAAAT	0	135	1
          **  ** ** ** **
MAP Score: 1.90738

Motif 3
CAGATAAGAACACACACACCAACATTATGGT	0	21	1
TATTCTGTTACAAACCCTTCCTGGATGGAGG	0	51	1
AGAAAAATAACTCCCACTCCCTGCACACGCA	0	123	1
CCACTCCCTGCACACGCAGCAAGCGAATGTA	0	136	1
          ***** *****
MAP Score: 1.40999

Motif 4
CAGATAAGAACACACACACCAACATTATGG	0	21	1
GGTATTCTGTTACAAACCCTTCCTGGATGG	0	49	1
AAAAATAACTCCCACTCCCTGCACACGCAG	0	125	1
CCACTCCCTGCACACGCAGCAAGCGAATGT	0	136	1
          **********
MAP Score: 0.310981