AlignACE 3.0 10/20/99 AlignACE2 -i EC_fusions014_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 943438039 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 eaeH 300 attaching and effacing protein, pathogenesis factor #1 b0298 37 putative factor #2 b0373 104 putative factor #3 b0540 300 orf, hypothetical protein #4 b1027 76 orf, hypothetical protein #5 b2088 87 orf, hypothetical protein Motif 1 AGTTATATTTCTTACTCTGCGGACAGTGAA 0 29 0 TGAGAGTTTACTCACTTAGCCGCGTGTCCA 1 10 0 TGAGTAAACTCTCAGTCAGAG 1 26 1 GTAATCTGATCTTACCCAGCAATAGTGGAC 2 52 1 TGAGAGTTTACTCACTTAGCCGCGTGTCCA 2 77 0 TGAGTAAACTCTCAGTCAGAG 2 93 1 TTTCTGCGATCTTCGCCAGAGCCTGTGCAC 3 97 0 GTAATCTGATCTTACCCAGCAATAGTGGAC 3 248 1 TGAGAGTTTACTCACTTAGCCGCGTGTCCA 3 273 0 TGAGTAAACTCTCAGTCAGAG 3 289 1 AGGCACTGATCTTACCCAGCAATAGTGGAC 4 24 1 TGAGAGTTTACTCACTTAGCCGCGTGTCCA 4 49 0 TGAGTAAACTCTCAGTCAGAG 4 65 1 ACGGTCTGATCTTACCCAGCAATAGTGGAC 5 35 1 TGAGAGTTTACTCACTTAGCCGCGTGTCCA 5 60 0 TGAGTAAACTCTCAGTCAGAG 5 76 1 ********** MAP Score: 59.2143 Motif 2 TTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGA 0 205 1 TGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG 1 8 1 CTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT 2 57 1 AGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG 2 75 1 GGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGAT 3 78 1 CTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT 3 253 1 AGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG 3 271 1 CTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT 4 29 1 AGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG 4 47 1 CTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT 5 40 1 AGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG 5 58 1 * ** * * * ** * * MAP Score: 48.7853 Motif 3 TGGACACGCGGCTAAGTGAGTAAACTCTCAGT 1 1 1 CGCGTGTCCACTATTGCTGGGTAAGATCAGATTACAACCTG 2 46 0 CAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGT 2 68 1 AAATCGTGCACAGGCTCTGGCGAAGATCGCAGAAATTAAAG 3 92 1 GAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAG 3 113 1 AGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTA 3 149 1 CGCGTGTCCACTATTGCTGGGTAAGATCAGATTACGGTTGC 3 242 0 CAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGT 3 264 1 CGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACA 4 18 0 CAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGT 4 40 1 CGCGTGTCCACTATTGCTGGGTAAGATCAGACCGTTATTCT 5 29 0 CAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGT 5 51 1 * * *** *** * * MAP Score: 37.9294 Motif 4 GCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAG 0 126 1 TGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG 1 8 1 AGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG 2 75 1 AGCCTGTGCACGATTTAGAGGTCTACCGCCCATAACAGGAAGT 3 65 0 TACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCG 3 188 1 AGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG 3 271 1 AGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG 4 47 1 AGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG 5 58 1 ** * ** * * *** MAP Score: 32.2193 Motif 5 TGGACACGCGGCTAAGTGAGTA 1 1 1 CAGCAATAGTGGACACGCGGCTAAGTGAGTA 2 68 1 GGTTGCGCCTGTTACCGCGGCAACGTCCTGT 3 217 0 CAGCAATAGTGGACACGCGGCTAAGTGAGTA 3 264 1 TCAGTGCCTGGCACACGCGTTTG 4 2 0 CAGCAATAGTGGACACGCGGCTAAGTGAGTA 4 40 1 CAGCAATAGTGGACACGCGGCTAAGTGAGTA 5 51 1 * ********* MAP Score: 28.5196 Motif 6 TGAATAGTGAATTATTCACTGTCCGCAGAGTAAGAAATATAACTT 0 15 1 CCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGT 0 132 1 GAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGC 0 212 1 GACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCA 0 252 1 CTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCA 1 3 0 TTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAG 2 63 1 CTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGC 2 70 0 AGACCTCTAAATCGTGCACAGGCTCTGGCGAAGATCGCAGAAATT 3 84 1 TTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAG 3 259 1 CTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGC 3 266 0 TTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAG 4 35 1 CTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGC 4 42 0 TTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAG 5 46 1 CTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGC 5 53 0 * ** ** * * * ** MAP Score: 28.0891 Motif 7 TTATATTTCTTACTCTGCGGACAGTGAATAATTCACTATTCAGAG 0 12 0 TGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG 1 2 1 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACAAC 2 49 0 AGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG 2 69 1 ATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCA 3 126 1 AAGCTCTTATGCGTCCCCAGGTAATGAATAATTGCCTCTTTGCCC 3 166 0 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGATTACGGT 3 245 0 AGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG 3 265 1 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGC 4 21 0 AGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG 4 41 1 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGACCGTTAT 5 32 0 * * * ** **** * MAP Score: 25.1845 Motif 8 CGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGA 0 210 1 CGGTGATAGTATTGGCGTACAGGTTGTAATCTGATC 2 27 1 CTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT 2 62 1 TAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGAT 3 83 1 CTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT 3 258 1 CTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT 4 34 1 CTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT 5 45 1 * * * * ** *** * MAP Score: 17.8714 Motif 9 ACCACCTGATGAGTGGCTATAGGCACTGGATATATT 0 131 1 AGACGCCATTATTTGTGTCTGCCTATGTTCGTTAAT 0 251 1 ACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG 1 15 1 CTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT 2 62 1 ACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG 2 82 1 TAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGAT 3 83 1 GGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGC 3 193 1 CTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT 3 258 1 ACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG 3 278 1 CTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT 4 34 1 ACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG 4 54 1 CTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT 5 45 1 ACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG 5 65 1 *** ** ** * * * MAP Score: 14.3964 Motif 10 CACTCTGAATAGTGAATTATTCACTGTCCGCAGA 0 2 1 CTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA 2 57 1 CTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA 3 253 1 CTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA 4 29 1 CTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA 5 40 1 * ******* * * MAP Score: 9.26491 Motif 11 TATATTTCTTACTCTGCGGACAGTGAATAATTC 0 23 0 CGGTTTTTCTGACAAGCAGACGCCATTATTTGT 0 234 1 AATTAACGAACATAGGCAGACACAAATAATGGC 0 255 0 CTCTGACTGAGAGTTTACTCACT 1 24 0 ACGGTGATAGTATTGGCGTACAGGTTGTAATCT 2 26 1 TCTTACCCAGCAATAGTGGACACGCGGCTAAGT 2 61 1 CTCTGACTGAGAGTTTACTCACT 2 91 0 GGTTAATTCGCGCTGTCATACAGG 3 1 0 GCGCGAATTAACCGTGGTGAGACGATACCTGAA 3 21 1 CTAAATCGTGCACAGGCTCTGGCGAAGATCGCA 3 90 1 GCAAGTGTATGACGGGCAAAGAGGCAATTATTC 3 153 1 AATTATTCATTACCTGGGGACGCATAAGAGCTT 3 178 1 CCGCGGCAACGTCCTGTGCACAGAAGCTCTTAT 3 201 0 TCTTACCCAGCAATAGTGGACACGCGGCTAAGT 3 257 1 CTCTGACTGAGAGTTTACTCACT 3 287 0 TAAGATCAGTGCCTGGCACACGCGTTTG 4 5 0 TCTTACCCAGCAATAGTGGACACGCGGCTAAGT 4 33 1 CTCTGACTGAGAGTTTACTCACT 4 63 0 TCTTACCCAGCAATAGTGGACACGCGGCTAAGT 5 44 1 CTCTGACTGAGAGTTTACTCACT 5 74 0 * * *** ***** MAP Score: 5.433