AlignACE 3.0 10/20/99
AlignACE2 -i EC_fusions014_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943438349
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	eaeH	300	attaching and effacing protein, pathogenesis factor
#1	b0298	37	putative factor
#2	b0373	104	putative factor
#3	b0540	300	orf, hypothetical protein
#4	b1027	76	orf, hypothetical protein
#5	b2088	87	orf, hypothetical protein

Motif 1
TAAGTTATATTTCTTACTCTGCGGACAGTGA	0	30	0
AGAGTTTACTCACTTAGCCGCGTGTCCA   	1	7	0
AGTGAGTAAACTCTCAGTCAGAG        	1	24	1
TTGTAATCTGATCTTACCCAGCAATAGTGGA	2	50	1
AGAGTTTACTCACTTAGCCGCGTGTCCACTA	2	74	0
AGTGAGTAAACTCTCAGTCAGAG        	2	91	1
AATTTCTGCGATCTTCGCCAGAGCCTGTGCA	3	98	0
ACACTTGCTCCTTTCAGTCCGAACTTAGCTT	3	130	0
GAATAATTGCCTCTTTGCCCGTCATACACTT	3	155	0
CCGTAATCTGATCTTACCCAGCAATAGTGGA	3	246	1
AGAGTTTACTCACTTAGCCGCGTGTCCACTA	3	270	0
AGTGAGTAAACTCTCAGTCAGAG        	3	287	1
CCAGGCACTGATCTTACCCAGCAATAGTGGA	4	22	1
AGAGTTTACTCACTTAGCCGCGTGTCCACTA	4	46	0
AGTGAGTAAACTCTCAGTCAGAG        	4	63	1
TAACGGTCTGATCTTACCCAGCAATAGTGGA	5	33	1
AGAGTTTACTCACTTAGCCGCGTGTCCACTA	5	57	0
AGTGAGTAAACTCTCAGTCAGAG        	5	74	1
          ********* *
MAP Score: 55.4444

Motif 2
TTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGA	0	205	1
  TGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG  	1	8	1
CTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT	2	57	1
AGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG  	2	75	1
GGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGAT	3	78	1
CTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT	3	253	1
AGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG  	3	271	1
CTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT	4	29	1
AGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG  	4	47	1
CTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT	5	40	1
AGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG  	5	58	1
          *    **  * * * ** * *
MAP Score: 48.7853

Motif 3
TTTCCCCCATAAATAAAAATATAATCCCGCGCCCAACCACCTGAT	0	96	1
ATAGGCAGACACAAATAATGGCGTCTGCTTGTCAGAAAAACCGGG	0	232	0
CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCA          	1	0	0
TGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG        	1	10	1
TGCTGGGTAAGATCAGATTACAACCTGTACGCCAATACTATCACC	2	28	0
CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGG	2	67	0
TGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG        	2	77	1
CGTCCCCAGGTAATGAATAATTGCCTCTTTGCCCGTCATACACTT	3	155	0
CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGG	3	263	0
TGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG        	3	273	1
CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGG	4	39	0
TGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG        	4	49	1
CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGG	5	50	0
TGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAG        	5	60	1
          *   *       * ***   *** *
MAP Score: 33.257

Motif 4
          CACTCTGAATAGTGAATTATTCACTGT	0	0	1
ATATTTCTTACTCTGCGGACAGTGAATAATTCACTAT	0	18	0
CCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTG	0	122	1
      TGGACACGCGGCTAAGTGAGTAAACTCTCAG	1	4	1
CAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAG	2	71	1
CAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAG	3	267	1
CAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAG	4	43	1
CAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAG	5	54	1
          * * * *   ***** *
MAP Score: 32.1507

Motif 5
ATAAAAATATAATCCCGCGCCCAACCACCTGAT	0	108	1
AAATAATGGCGTCTGCTTGTCAGAAAAACCGGG	0	232	0
TTACTCACTTAGCCGCGTGTCCA          	1	0	0
TAAGTGAGTAAACTCTCAGTCAGAG        	1	22	1
TCAGATTACAACCTGTACGCCAATACTATCACC	2	28	0
TTACTCACTTAGCCGCGTGTCCACTATTGCTGG	2	67	0
TAAGTGAGTAAACTCTCAGTCAGAG        	2	89	1
TTACTCACTTAGCCGCGTGTCCACTATTGCTGG	3	263	0
TAAGTGAGTAAACTCTCAGTCAGAG        	3	285	1
       CAAACGCGTGTGCCAGGCACTGATCT	4	3	1
TTACTCACTTAGCCGCGTGTCCACTATTGCTGG	4	39	0
TAAGTGAGTAAACTCTCAGTCAGAG        	4	61	1
TTACTCACTTAGCCGCGTGTCCACTATTGCTGG	5	50	0
TAAGTGAGTAAACTCTCAGTCAGAG        	5	72	1
          * ****  *****
MAP Score: 31.7619

Motif 6
TTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGT	0	239	1
         TGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAG	1	1	1
CAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAG	2	68	1
TGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGAT	3	214	1
CAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAG	3	264	1
CAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAG	4	40	1
CAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAG	5	51	1
          *    *****  *   * *    *
MAP Score: 30.9187

Motif 7
TTAATGACTTGCACAAAAAGCTAAATTTTCCCC	0	70	1
TATAGCCACTCATCAGGTGGTTGGGCGCGGGAT	0	119	0
TTTCTGACAAGCAGACGCCATTATTTGTGTCTG	0	239	1
TTAATTCGTTCATCAGGAAATTATCTCA     	0	282	1
         TGGACACGCGGCTAAGTGAGTAAA	1	1	1
TAGTATTGGCGTACAGGTTGTAATCTGATCTTA	2	33	1
CAGCAATAGTGGACACGCGGCTAAGTGAGTAAA	2	68	1
CTACCGCCCATAACAGGAAGTTGTTTTACTGGT	3	53	0
TCTAAATCGTGCACAGGCTCTGGCGAAGATCGC	3	89	1
GAGCTTCTGTGCACAGGACGTTGCCGCGGTAAC	3	205	1
CAGCAATAGTGGACACGCGGCTAAGTGAGTAAA	3	264	1
TCAGTGCCTGGCACACGCGTTTG          	4	0	0
CAGCAATAGTGGACACGCGGCTAAGTGAGTAAA	4	40	1
TGCTGGGTAAGATCAGACCGTTATTCTCGACAG	5	23	0
CAGCAATAGTGGACACGCGGCTAAGTGAGTAAA	5	51	1
          * *****  ****
MAP Score: 21.989