AlignACE 3.0 10/20/99
AlignACE2 -i EC_operons109_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943443560
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	b1833	75	orf, hypothetical protein
#1	yebU	73	putative nucleolar proteins
#2	def	129	peptide deformylase
#3	sun	45	orf, hypothetical protein
#4	trkA	21	transport of potassium
#5	mscL	129	mechanosensitive channel

Motif 1
CGGCGCAGGCACGCCGGAGCAGTGGGCA   	1	7	0
TAGCATAAACGCTCCGGCGCAGGCACGCCGG	1	21	0
     CCTTATCTCCCTGCCATAAGCAGCCT	2	5	1
AAAGATTGCTAAGGCTGCTTATGGCAGGGAG	2	16	0
AATCTTTCTAACTCCTGAACACATCTCTGGA	2	103	1
AAGTATAAAAACGCCCGGCAAGACCGGGCTT	3	24	0
GCGTCATTAGACGCCTTATTAA         	5	1	0
GCGTCTAATGACGCCTTATTATTTCCCTTTG	5	18	1
GAATTTAATTAATCCTTGATAATCAAAGGGA	5	41	0
TGGCAGGAAAATGGCTTAACATTTGTTAGAC	5	77	1
CTTATGGTTGTCGGCTTCATAGGGAGAATAA	5	107	1
          ******** **
MAP Score: 4.61548

Motif 2
       TTAATAAGGCGTCTAATGACGCC	5	3	1
AAGGGAAATAATAAGGCGTCATTAGACGCC	5	17	0
TCTCCCTGCCATAAGCAGCCTTAGCAATCT	2	15	1
      TGAGATAACGGGTCGCGACTG   	4	4	1
GCAGTTTAGCATAAACGCTCCGGCGCAGGC	1	28	0
    AAGTATAAAAACGCCCGGCAAGACCG	3	29	0
CCACTGGCAAAAAAACAGGCGCGCAGTTTA	1	50	0
AACGCCCGGCAAGACCGGGCTTAGAAGAGT	3	16	0
          **********
MAP Score: 4.12337

Motif 3
AAACGCTCCGGCGCAGGCACGCCGGAGCAGTG	1	14	0
GAATGATCTTGAGCATTAACGCATTTA     	0	5	0
GCCTGCGCCGGAGCGTTTATGCTAAACTGCGC	1	28	1
CTTTGCGATTGGTCAGTGATGCTGTCAATCAG	2	43	1
ACTCTTCTAAGCCCGGTCTTGCCGGGCGTTTT	3	16	1
TTAATAAGGCGTCTAATGACGCCTTATTATTT	5	10	1
          * ***** ****
MAP Score: 2.14035

Motif 4
TGATCTTGAGCATTAACGCATTTA       	0	3	0
TTAACATTAATCTTAACCCATGATGGGAATG	0	32	0
CTTTCTAACTCCTGAACACATCTCTGGAGAT	2	106	1
         TTAATAAGGCGTCTAATGACGC	5	1	1
CAAAGGGAAATAATAAGGCGTCATTAGACGC	5	18	0
GTCTAACAAATGTTAAGCCATTTTCCTGCCA	5	77	0
AAGCCGACAACCATAAGTCTAACAAATGTTA	5	93	0
TTATTCTCCCTATGAAGCCGACAACCATAAG	5	107	0
          ******* ***
MAP Score: 1.75858