AlignACE 3.0 10/20/99
AlignACE2 -i EC_operons123_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943442089
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	ansA	166	cytoplasmic L-asparaginase I
#1	ansB	175	periplasmic L-asparaginase II
#2	dcuB	300	anaerobic dicarboxylate transport
#3	dcuA	117	anaerobic dicarboxylate transport

Motif 1
GACGAATCCTCTTCCCGCTGTTTCGCCCCATATT	0	60	1
GTGCGCTCCCCCTGCCTCACGTATATACTTTTGC	0	115	1
AATACTTTTTTATGCCGTTTAATTCTTCGTTTTG	1	31	1
CGTTTTGTTACCTGCCTCTAACTTTGTAGATCTC	1	58	1
CGCTACGCATTATCCCTTAGCTCTGTATGGGAAA	1	129	0
TAATGTTTTGTTTGCTGTTATCTTATTGATATTT	2	32	0
AGTGCATAAATTTGCCGCTGCTTTAATCAGCCAA	2	135	1
CAAAACAGAACGTGACTGTGATCTATTCAGCAAA	2	244	1
CGTCATCTGACGTGCCTTTTTTATTTGTACTACC	3	18	0
CGTCAGATGACGTGCCTTTTTTCTTGTGAGCAGT	3	40	1
    ATTAGCCTTCCTTGTTTTTTAACAAGTTGA	3	97	0
          * *******  * *
MAP Score: 4.78332

Motif 2
TCGTCGACGTAAAAAATAATGTGGCCGACGATC	0	32	0
AAACGGCATAAAAAAGTATTATGCCGTCTTAAA	1	18	0
ACAGCAAACAAAACATTAACATCTGCGCAGTAC	2	48	1
TCTCTCTGAAAAAGCCGCTTATCACAGTGCATA	2	110	1
CAGTTCATACAAAACAGAACGTGACTGTGATCT	2	235	1
GCAAAAATTTAAATAGGATTATCGCGAGGGTTC	2	273	1
AGTACAAATAAAAAAGGCACGTCAGATGACGTG	3	21	1
GCTCACAAGAAAAAAGGCACGTCATCTGACGTG	3	38	0
          *** * ** ****
MAP Score: 3.38614

Motif 3
CAGATCGTCGGCCACATTATTTTTTACGTCGACG	0	30	1
CCGCTGTTTCGCCCCATATTTCCTTATCCGCATA	0	74	1
ACTTTTTTATGCCGTTTAATTCTTCGTTTTGTTA	1	34	1
TTTGTTACCTGCCTCTAACTTTGTAGATCTCCAA	1	61	1
CTCTGAAAAAGCCGCTTATCACAGTGCATAAATT	2	113	1
TAAATTTGCCGCTGCTTTAATCAGCCAATATTCA	2	141	1
CATCTGACGTGCCTTTTTTATTTGTACTACCCTG	3	15	0
CAGATGACGTGCCTTTTTTCTTGTGAGCAGTAAC	3	43	1
          *** ****  ** *
MAP Score: 3.15577

Motif 4
GTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACG	0	22	1
TCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATA	0	66	1
 TCCTCTATTTTAAGACGGCATAATACTTTTTTATGCCGTTT	1	9	1
TTCTTCGTTTTGTTACCTGCCTCTAACTTTGTAGATCTCCAA	1	53	1
TCTTATTGATATTTATCGGTCTATTTTTTGTTCTCA      	2	4	0
GTTAATGTTTTGTTTGCTGTTATCTTATTGATATTTATCGGT	2	26	0
GGGTTTATAGTTTGTACTGCGCAGATGTTAATGTTTTGTTTG	2	52	0
TATTGGCTGATTAAAGCAGCGGCAAATTTATGCACTGTGATA	2	129	0
AATCAGCCAATATTCACTGTGAGGTATTTGCTAAAGCCGGTA	2	159	1
GTGACTGTGATCTATTCAGCAAAAATTTAAATAGGATTATCG	2	255	1
          * *   * **    ** **  *
MAP Score: 1.84579

Motif 5
GTTTCGCCCCATATTTCCTTATCCGCATAGTATCAG	0	79	1
CCTGCCTCACGTATATACTTTTGCTCTTTCGATATC	0	125	1
AGACGGCATAATACTTTTTTATGCCGTTTAATTCTT	1	22	1
TACAACGTGAATATATTTTGGAGATCTACAAAGTTA	1	76	0
CGATGGGTTTATAGTTTGTACTGCGCAGATGTTAAT	2	62	0
TCACTGTGAGGTATTTGCTAAAGCCGGTAACGACCA	2	172	1
GACCAAACGGATATTTAGTCAGGCTCTGAAAACAGT	2	203	1
          ******  *   ** *
MAP Score: 0.918685

Motif 6
GAGGCAGGTAACAAAACGAAGAATTAAACG	1	46	0
CGTCAAATTTCCCATACAGAGCTAAGGGAT	1	122	1
ATAAGATAACAGCAAACAAAACATTAACAT	2	40	1
GCCGGTAACGACCAAACGGATATTTAGTCA	2	194	1
AACAGTTCATACAAAACAGAACGTGACTGT	2	233	1
          **********
MAP Score: 0.917365