AlignACE 3.0 10/20/99
AlignACE2 -i EC_profile114_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943441853
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	ybiK	203	putative asparaginase
#1	oppA	300	oligopeptide transport; periplasmic binding protein
#2	oppB	85	oligopeptide transport permease protein
#3	sapA	300	homolog of Salmonella peptide transport periplasmic protein
#4	rtn	180	orf, hypothetical protein
#5	yejA	75	orf, hypothetical protein

Motif 1
GGTCCCAATCCGGGATTACACATGCTGGTTAATACC	1	244	1
ATAAAGCGTTCACGCCGCATCTGGCTAACAATGACA	3	37	1
AACAATGACACGCACTGCAGCGTGCTTTAATGGGTT	3	63	1
ACGATCGTACCGCTCTGCTCCTCGCTAAGTTGTTCT	3	103	1
GATGTTTCCGCGTCTTGATCCAGGCTATAGTCCGGT	4	105	1
CATCATTAGCCGCAATCCGGCATGCTTTCACTATGA	5	33	0
          ***  ***  *  ***
MAP Score: 4.0084

Motif 2
GGCATGTAAAGGCAGGACCCAGCGCTACGCCCGAGG	0	80	0
         TGGCAATACGTGGGGCAGGAGTGTCCT	2	1	1
TGATTTTTATCGCATTACAGAAGGCACAGGCCAGAA	2	50	1
AACAATGACACGCACTGCAGCGTGCTTTAATGGGTT	3	63	1
ACGATCGTACCGCTCTGCTCCTCGCTAAGTTGTTCT	3	103	1
CATCATTAGCCGCAATCCGGCATGCTTTCACTATGA	5	33	0
          **** * *  *  ***
MAP Score: 3.64793

Motif 3
TGTCAGAAAAACGCCACAGACTGTATGCCACCTC	0	50	1
AATTACTGGTATTAACCAGCATGTGTAATCCCGG	1	253	0
GGACACTCCTGCCCCACGTATTGCCA        	2	2	0
GATTTTTATCGCATTACAGAAGGCACAGGCCAGA	2	51	1
TACAGAAGGCACAGGCCAGAAGGTAGGGCA    	2	65	1
TAAAGCGTTCACGCCGCATCTGGCTAACAATGAC	3	38	1
ACAATGACACGCACTGCAGCGTGCTTTAATGGGT	3	64	1
GGGTACGAATGTTGAACAGATGGCGACGTCACCT	3	165	1
CTGTTCAACGACCAACCACACGGCCCTCATTACG	3	197	1
CATAGTGAAAGCATGCCGGATTGCGGCTAATGAT	5	34	1
          **   ***** ***
MAP Score: 2.33162

Motif 4
CTCGACAGGGGAGACACAGTACGAATCGACATAA	1	115	1
AGCCTGTGCAGGGTCCCAATCCGGGATTACACAT	1	233	1
GGCTAACAATGACACGCACTGCAGCGTGCTTTAA	3	59	1
ACAACTTAGCGAGGAGCAGAGCGGTACGATCGTG	3	102	0
CCAACCACACGGCCCTCATTACGACCCCTGAACA	3	208	1
TACTCATCATTAGCCGCAATCCGGCATGCTTTCA	5	39	0
          *** * ** * ***
MAP Score: 1.5148

Motif 5
ATTATGTCAGAAAAACGCCACAGACTGTATGCC	0	46	1
GTGTCTCGACAGGGGAGACACAGTACGAATCGA	1	111	1
GTAACGATAAAGTAACCTGACAGCAGAAAGTCT	1	197	1
TTATCGCATTACAGAAGGCACAGGCCAGAAGGT	2	56	1
TTATAGTTATAGAGAAATCACGGGTACGAATGT	3	144	1
CTGTTCAACGACCAACCACACGGCCCTCATTAC	3	197	1
TGACGAGTTAACTGAAAGCACTGCTTAGGCAGT	4	42	1
TCGTAATTTCAGGAAATTAACGGAATC      	4	163	1
          ** ***  *****
MAP Score: 1.49287

Motif 6
ACAGACTGTATGCCACCTCGGGCGTAGCGCTGGGTCCTGCCTTTAC	0	65	1
AACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATT	1	19	1
AAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATA	1	102	1
CCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGG	1	212	1
CCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCA	1	235	1
GTCATTGTTAGCCAGATGCGGCGTGAACGCTTTATCCGGACAACGA	3	26	0
TTCTGTGAGTTATAGTTATAGAGAAATCACGGGTACGAATGTTGAA	3	135	1
GTACGAATGTTGAACAGATGGCGACGTCACCTGTTCAACGACCAAC	3	167	1
          *  *    * * *    ***  *  *
MAP Score: 0.734783

Motif 7
TAGCAAAAGTGGCGAACCACCCTTAATGGACGAATACT 	0	175	1
AGAATCGTCTGGCGGTTGCCCGGAAAGTACCAAATGCGG	1	21	0
GTGTAATCCCGGATTGGGACCCTGCACAGGCTCGGAGAC	1	226	0
         TGGCAATACGTGGGGCAGGAGTGTCCTGCT	2	1	1
ACGTGGGGCAGGAGTGTCCTGCTCCACGGTGTCTGATTT	2	17	1
ACTATAGCCTGGATCAAGACGCGGAAACATCATTTTCTC	4	97	0
TCTTGATCCAGGCTATAGTCCGGTCATTGTTATCTTTTA	4	117	1
GCCGGATTGCGGCTAATGATGAGTAAAAGGAAATCCG  	5	48	1
          ***    * ** * **  *
MAP Score: 0.546512

Motif 8
CGCTGGGTCCTGCCTTTACATGCCATATCCA	0	92	1
TGTTAATTATTCTCATTACCAATAAAGAATC	1	54	0
CTGTGCAGGGTCCCAATCCGGGATTACACAT	1	236	1
          TGGCAATACGTGGGGCAGGAG	2	0	1
CTGATTTTTATCGCATTACAGAAGGCACAGG	2	49	1
TAATGACATTTGCCATTACCGTTTGTGTTCA	3	236	0
TGCAATCCCTTGGCTATCCTGACGAGTTAAC	4	23	1
TCATCATTAGCCGCAATCCGGCATGCTTTCA	5	39	0
          ********* *
MAP Score: 0.533676

Motif 9
AACCGCATTTGGTACTTTCCGGGCAACCGCCA	1	19	1
CGACAGGGGAGACACAGTACGAATCGACATAA	1	117	1
CCTGTGCAGGGTCCCAATCCGGGATTACACAT	1	235	1
CATTACAGAAGGCACAGGCCAGAAGGTAGGGC	2	62	1
CTTGATCCAGGCTATAGTCCGGTCATTGTTAT	4	118	1
CTCATCATTAGCCGCAATCCGGCATGCTTTCA	5	39	0
          * **** *****
MAP Score: 0.428203