AlignACE 3.0 10/20/99
AlignACE2 -i EC_profile115_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943441874
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	b0868	62	putative nucleotide di-P-sugar epimerase or dehydratase
#1	ybjU	36	putative arylsulfatase
#2	poxB	132	pyruvate oxidase
#3	ydbA_1	300	split orf
#4	otsB	166	trehalose-6-phosphate phophatase, biosynthetic
#5	yigN	140	putative alpha helix chain
#6	ubiE	94	2-octaprenyl-6-methoxy-1,4-benzoquinone --> 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone

Motif 1
CCCGATGATATTCCTTTCATCGGGCTATTTAAC	2	20	1
CTATTTAACCGTTAGTGCCTCCTTTCTCTCCCA	2	44	1
CGGTAACAAGTTTAGTTCATCTGACGGAGGGGG	2	83	0
AATTCATACCGTTTTTTCATCATATAATTATTT	3	56	1
AATTGGTCGGGTTAGTGCATCCGGCTTTCTTTA	3	256	1
CATAACGGTTGGCTGTTCTTCGTTGCAAATGGC	4	59	1
CAGTTGGAAAGGCATTTCCTGCGAGGCGCTACG	5	59	0
GTGCGGGTAAGTTGTTGCGTCAGGAGGCGTT  	5	119	1
          *** **** ** *
MAP Score: 4.92238

Motif 2
ATTTAACCGTTAGTGCCTCCTTTCTCTCCC	2	46	1
GTAACAAGTTTAGTTCATCTGACGGAGGGG	2	84	0
TTGGTCGGGTTAGTGCATCCGGCTTTCTTT	3	258	1
TATTTTTGCGTAGCGCCTCGCAGGAAATGC	5	51	1
GGTAGAAATCTAGGGCATCGACGCCCAATC	6	32	1
          **********
MAP Score: 4.42164

Motif 3
TCGACAAAACCTGCGTTATTCTTTCATGTTTCC	0	10	1
    ATAAAGCAGAGTTATGTTTAAGCTCTGCT	3	6	1
TGTTTAAGCTCTGCTTTATTTATTTGAGTATTA	3	24	1
CAAATTAAAACCACATTCTCATTATAAATAATT	3	81	0
TTTTATTCACCTGAATTATAATTGTGAATTATA	3	156	1
TTAGTGCATCCGGCTTTCTTTATATTCGCCAGA	3	267	1
  CCGGTTCTCCTCCTTCTCTTTTCTTATTGTG	4	145	0
CCGACGCGTTCGGCCTTTTGTATTTTTGCGTAG	5	31	1
GTTTGTACAGCACAATTCTATTTTGTGCGGGTA	5	95	1
          * ** **** ***
MAP Score: 4.10011

Motif 4
ATTTCCCCCATGATGCAATGGGAAACATGAAAGAATAA	0	25	0
CGATGATATTCCTTTCATCGGGCTATTTAACCGTTAGT	2	22	1
TTGGTCGGGTTAGTGCATCCGGCTTTCTTTATATTCGC	3	258	1
TTTCTTTATATTCGCCAGAAGGATTTATT         	3	281	1
AGCCAACCGTTATGGCGGTTGGCTATGGTGGGAAAAAA	4	35	0
GGCTGTTCTTCGTTGCAAATGGCGACCCCCGTCACACT	4	69	1
TCTTATTGTGTTGCGCAGAACGCGCTTTACAGACATGT	4	117	0
GTCTGAAGGCCGACGCGTTCGGCCTTTTGTATTTTTGC	5	22	1
CCTTTTGTATTTTTGCGTAGCGCCTCGCAGGAAATGCC	5	44	1
CAGGAAATGCCTTTCCAACTGGACGTTTGTACAGCACA	5	71	1
GCGGGTAAGTTGTTGCGTCAGGAGGCGTT         	5	121	1
          *  ****   ***  * *
MAP Score: 3.54253

Motif 5
         AAAGGGTGGCATTTCCCGTCATA	1	1	1
GAAAGGAATATCATCGGGCATAAGGCGA    	2	6	0
GATATTCCTTTCATCGGGCTATTTAACCGTTA	2	26	1
TCGGGTTAGTGCATCCGGCTTTCTTTATATTC	3	262	1
AACCGTTATGGCGGTTGGCTATGGTGGGAAAA	4	37	0
AACCGCCATAACGGTTGGCTGTTCTTCGTTGC	4	53	1
CAGTGTGACGGGGGTCGCCATTTGCAACGAAG	4	76	0
GAAGGCCGACGCGTTCGGCCTTTTGTATTTTT	5	26	1
AGTTGTTGCGTCAGGAGGCGTT          	5	128	1
AATTTTTTGATGAGCAGGCATTGAG       	6	79	1
          ***** *** **
MAP Score: 2.90255

Motif 6
  AAAGGGTGGCATTTCCCGTCATAATAAGGA	1	8	1
TATGCCCGATGATATTCCTTTCATCGGGCTAT	2	16	1
TTAACCGTTAGTGCCTCCTTTCTCTCCCATCC	2	48	1
CTCCTTTCTCTCCCATCCCTTCCCCCTCCGTC	2	62	1
GTTGCAAATGGCGACCCCCGTCACACTGTCTA	4	80	1
       TTCTCTTCTCCTGTCTGAAGGCCGA	5	3	1
AAGGCCGAACGCGTCGGCCTTCAGACAGGAGA	5	16	0
CGCCTCGCAGGAAATGCCTTTCCAACTGGACG	5	64	1
          **  ********
MAP Score: 2.27998

Motif 7
TGTCCTTATTATGACGGGAAATGCCACCCTTT       	1	3	0
TATTTAACCGTTAGTGCCTCCTTTCTCTCCCATCCCTTC	2	45	1
TTCTGCAACAATTTAGCGTTTTTTCCCACCATAGCCAAC	4	17	1
TTCGTTGCAAATGGCGACCCCCGTCACACTGTCTATACT	4	77	1
GCCTTTTGTATTTTTGCGTAGCGCCTCGCAGGAAATGCC	5	43	1
CTAGATTTCTACCCGGCTTAACTACTCCCAATGGG    	6	6	0
CCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTAC	6	29	1
          **   ***   ** * * *
MAP Score: 1.04357

Motif 8
  TCTTCCGTGATTTCCCCCATGATGCAATGGG	0	41	0
TTATTATGACGGGAAATGCCACCCTTT      	1	4	0
      TCGCCTTATGCCCGATGATATTCCTTT	2	4	1
ACTAACGGTTAAATAGCCCGATGAAAGGAATAT	2	27	0
GCTATTTAACCGTTAGTGCCTCCTTTCTCTCCC	2	43	1
TCTCTCCCATCCCTTCCCCCTCCGTCAGATGAA	2	68	1
AAGCCGGATGCACTAACCCGACCAATTAGTTAT	3	250	0
ACAATTTAGCGTTTTTTCCCACCATAGCCAACC	4	24	1
GTTCTTCGTTGCAAATGGCGACCCCCGTCACAC	4	73	1
TTACATGTCTGTAAAGCGCGTTCTGCGCAACAC	4	115	1
CTTCTCCTGTCTGAAGGCCGACGCGTTCGGCCT	5	14	1
TTGTATTTTTGCGTAGCGCCTCGCAGGAAATGC	5	48	1
GAAGTGTAACAGATTGGGCGTCGATGCCCTAGA	6	40	0
          *  ** *******
MAP Score: 0.425541