AlignACE 3.0 10/20/99
AlignACE2 -i EC_sum_all130_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943442992
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	yaiP	123	polysaccharide metabolism
#1	yhjQ	35	orf, hypothetical protein
#2	yhjR	272	orf, hypothetical protein

Motif 1
CAATTTCGCGGACAACAGGTCAATAGCGATCTGGGTGAA	0	55	1
ATTTTGTCTGATTATCAGTTTACTAGCGAAAGCTAAGAA	2	16	1
CGAAAGCTAAGAAATAAACCTACCATTGAAATTAAAACT	2	42	1
ATCAATTTAGAAGGTCACAAGACGTGTGATTTTAGTCTT	2	100	1
CTGTTGCGTAACGGAAAGTCAAAAAGTGAGCAAATTCCC	2	156	1
CCGTCTCGCCGTAAACAATAAACCGGCGAAATGCTCACG	2	193	1
TACCGTTCATGAGACAATTCTAACCGTGAGCATTTCGCC	2	217	0
TGATCCCTATGAAATAACCGTACCGTTCATGAGACAATT	2	237	0
          *  * **    **  ****
MAP Score: 4.28445

Motif 2
TCATGACGCATATAATCGCGTCGTTC         	0	1	0
CCCAGATCGCTATTGACCTGTTGTCCGCGAAATTG	0	55	0
   GTCACCATTTTGTCTGATTATCAGTTTACTAG	2	7	1
AAAGCTAAGAAATAAACCTACCATTGAAATTAAAA	2	44	1
GACGTGTGATTTTAGTCTTTTCGTTTTTAACTTTT	2	120	1
TTTGCTCACTTTTTGACTTTCCGTTACGCAACAGA	2	155	0
ACCGTGAGCATTTCGCCGGTTTATTGTTTACGGCG	2	199	0
ATCCCTATGAAATAACCGTACCGTTCATGAGACAA	2	239	0
          *** * *   *****
MAP Score: 3.28526

Motif 3
ATTGTTTACGGCGAGACGGGAATTTGCTCA	2	182	0
TGGTGAATGGCCGTACTGGGATAGCAGGGG	1	15	1
TTTTTCTGTTGCGTAACGGAAAGTCAAAAA	2	151	1
CAGGTCAATAGCGATCTGGGTGAAGGCTTT	0	70	1
CAATAAACCGGCGAAATGCTCACGGTTAGA	2	208	1
CCTGTTGTCCGCGAAATTGTGCAACTGCAC	0	44	0
GCGATTATATGCGTCATGATCGCCTGCGTG	0	17	1
TATGAAATAACCGTACCGTTCATGAGACAA	2	239	0
ATGATCGCCTGCGTGCAGTTGCACAATTTC	0	32	1
          **********
MAP Score: 3.1479