AlignACE 3.0 10/20/99
AlignACE2 -i EC_sum_all141_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943443162
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	cof	87	orf, hypothetical protein
#1	ybhA	154	putative phosphatase
#2	b0822	145	orf, hypothetical protein
#3	b0844	26	orf, hypothetical protein
#4	b0845	83	putative DEOR-type transcriptional regulator

Motif 1
TAAACCCGGAACAATATTATTTAACTATTCACTATT	0	11	1
ATTTAACTATTCACTATTACTTCCGTATATATCAGG	0	29	1
TGATACTCAATCACCATTAACCGTGTCACAGA    	0	65	1
CGCGAATGGTACACCGATACCACTATCGGACAAAAT	1	92	0
TAAATCATTCACATCATCAATTTCATCCTTACTTTC	2	41	1
GCTCTGCGTCACATTGTTATTACACTGTTACGGTTT	2	95	1
AAGAGGGAAGACAACATTAGCAAGGTTGTGTACATT	4	39	0
          *** ***** *    *
MAP Score: 2.96262

Motif 2
    ATAAACCCGGAACAATATTATTTAACTATTCA	0	6	1
         TCTGTGACACGGTTAATGGTGATTGAG	0	70	0
TAGCAACTGACTGTAACAGCTAAAATTAGTCGCTTT	1	27	1
CGGGCTAAATCATTCACATCATCAATTTCATCCTTA	2	36	1
TTTGTGCTCTGCGTCACATTGTTATTACACTGTTAC	2	90	1
TGTTATTACACTGTTACGGTTTCATTTTCGAGCCAG	2	109	1
          * ** ***   * ***
MAP Score: 2.92866

Motif 3
  TCTCCTCGGCCCGGCGGCGTCGTCGCCGGGC	2	8	1
GAATGATTTAGCCCGGCGACGACGCCGCCGGGC	2	18	0
TCATTTTCGAGCCAGGAGCACACCT        	2	130	1
          *** ****  ***
MAP Score: 0.186527