AlignACE 3.0 10/20/99
AlignACE2 -i EC_sum_all160_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943443388
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	cysD	251	ATP:sulfurylase (ATP:sulfate adenylyltransferase), subunit 2
#1	selA	97	selenocysteine synthase: L-seryl-tRNA (Ser) selenium transferase
#2	yibF	227	putative S-transferase

Motif 1
CCATGCAAATTTTTTTACCGCCATAGTATGA	0	26	1
GATTTGAAATTGTTTTAGCGCAGCGGCAGTT	0	57	0
ATTTCAAATCTTCCTAAACGCCCGAAATCCG	0	78	1
ATATTAGCTTTGCCAAATCGTTATTCCGTTA	0	128	1
GAATGAGTAGTTCCTTAACGGAATAACGATT	0	143	0
ACCGTTCCTTTGCAATACCGCTATTTTCTTG	0	229	0
TTCTCATCCTTGTTTTATCGGGTTATTTGTC	2	10	1
          ******* ***
MAP Score: 3.73694

Motif 2
TACCATGCAAATTTTTTTACCGCCATAGTATGAAA	0	24	1
GCTTTGCCAAATCGTTATTCCGTTAAGGAACTACT	0	134	1
CAATACCGCTATTTTCTTGCCATCAGATGTTTCGA	0	213	0
TTATCGGGTTATTTGTCTGCTGACAGGCGAAACCC	2	24	1
AATTAGGAAAATATTTATATCACCATGATAAATAT	2	107	1
ACATTTTCTGCCCTTTTTCCCATCACCAGGCCATA	2	171	1
GGCCATACTGATATTTTTCCTCGCACAAAGGACTC	2	199	1
          ** *** * **  **
MAP Score: 2.50791

Motif 3
GAGTCCTTAAATACCATGCAAATTTTTTTACC	0	13	1
AAACAATTTCAAATCTTCCTAAACGCCCGAAA	0	73	1
  TGCGCGATATGTCCTCCTGACCCATCTCAC	1	8	1
       AGGAAACCTGGCTGATCAAGGCCCT	1	82	0
CTGACAGGCGAAACCCTACAGATTTATAAGAA	2	43	1
CTGAAGTGAGATATCCATCAGAGTGAAATAAT	2	78	1
TCCCATCACCAGGCCATACTGATATTTTTCCT	2	188	1
          * ***** ****
MAP Score: 1.96948

Motif 4
ACCATGCAAATTTTTTTACCGCCATAGTAT	0	25	1
AGATTTGAAATTGTTTTAGCGCAGCGGCAG	0	59	0
ATTTCATTCGTTCTCTTACGCTCCCTATAG	0	183	1
AATACCGCTATTTTCTTGCCATCAGATGTT	0	217	0
 TTCTCATCCTTGTTTTATCGGGTTATTTG	2	9	1
ATCGGGTTATTTGTCTGCTGACAGGCGAAA	2	26	1
ACCATCAACATTTTCTGCCCTTTTTCCCAT	2	164	1
ATACTGATATTTTTCCTCGCACAAAGGACT	2	203	1
          **********
MAP Score: 0.301735