AlignACE 3.0 10/20/99 AlignACE2 -i HI/HI_fusions001_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944236105 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 HI0362 300 iron (chelated) ABC transporter, periplasmic-binding protein (yfeA) #1 HI0621 175 ABC transporter, ATP-binding protein #2 HI0768 54 cell division protein (ftsY) #3 HI1079 67 amino acid ABC transporter, permease protein #4 HI1080 300 amino acid ABC transporter, periplasmic-binding protein #5 HI1087 300 ABC transporter, ATP-binding protein #6 HI1123 80 oligopeptide ABC transporter, permease protein (oppB) #7 HI1124 295 oligopeptide ABC transporter, periplasmic-binding protein (oppA) #8 HI1180 126 arginine ABC transporter, ATP-binding protein (artP) #9 HI1181 206 phosphoheptose isomerase (gmhA) #10 HI1475 227 H. influenzae predicted coding region HI1475 #11 HI1476 227 transcriptional regulatory protein #12 HI1618 95 ABC transporter, ATP-binding protein #13 HI1624 89 H. influenzae predicted coding region HI1624 #14 HI1638 69 peptide ABC transporter, periplasmic-binding protein (sapA) #15 HI1692 173 molybdenum ABC transporter, permease protein (modB) #16 HI1693 137 molybdenum ABC transporter, periplasmic-binding protein (modA) Motif 1 ACAAAACTCAATTTTTCTTCAAATAATTTCCTGACAAA 7 189 1 TCAAAAATTCATTTTTGTAAAGATTTGTCAGGAAATTA 7 212 0 GTAGTTGGGGATTTTTCAAGATATGTTTATCTTACGTA 9 41 0 TATCCTAGCCATTTTTACTAATATGCCTTACAATTTGA 14 14 1 TCAGATTATCTTTTTTAGACAGATTAGTTATGACTTAT 1 75 0 GGGCGTTTTCTTTTTTGTTTAAATTCTTAGTTTTTCTG 10 31 1 ACTTTTAGCAATTTTTTTAGCGATTTATTAGACACAAC 7 149 1 TGAAATGATGATTTTTTGCGATTTAGATCGAAAAAATA 9 86 0 CAAAGATCTGATTTTTTCTTAGTTTTCTTTCCCTAAGA 10 90 1 AAAGATTCGATTTTTATTGAAAATTGTGCTTAGTTTA 2 9 1 AAAATATTACATTTTTATGCATAATTATGCAAGTGCTA 8 70 0 CCTATTGTAAATATTTTCCTACATAAATTACCCTTTTA 7 70 0 TAAGCGTTATATATTTTACTAAATAATTTTTCTTTTGC 16 44 1 AATAATCTTTTTTTTTCATAAGTTTGGTTTTTATAATC 4 239 1 TCATTTGGCTATATTTTAATCTATTGTTTTACTATTTC 11 97 1 ATTAGGCGATATTTTTATAAAAAGTCTTCTATTTATTA 7 252 0 ACAAAAATGAATTTTTGAGCTAATAAATAGAAGACTTT 7 232 1 ACTTATATTAATTTTTTATAACTAAAATTCATAAACCA 4 195 1 TGTTTTGTTCTTTTTTCATACATTCAATACATTTTGTA 0 121 1 TATATGATTGTTATTTATTTCAATATATAATCAAGTAA 16 82 1 TTTCTTGGGATTTTTTATTAATAGCACTTGCATAATTA 8 49 1 TTTATTTCTATTTTTTATAGATTAAAATTTTTGTAATA 5 124 0 GTGCGGTAGATTATTTTCTTATTTTGATAGTAATCACT 4 160 1 TGAAGGGCGGATATTTCTGCCCTTTTGTTATTATAGAG 15 29 1 TTAGAAAGGCATTTTTTTACTGAAATTTTATAAGAGTA 4 81 1 TTATTTATAATTATTTCGTACAAAATGTATTGAATGTA 0 139 0 GCTTACCCAATTTTTTTCATTTTTCAATCTGACGCCA 15 146 1 CATTACAAGTTTATTTATAATCTTAAATTTCTATTAAT 4 35 1 ****** * ** * MAP Score: 30.0831 Motif 2 TAATTATAAATAAATCTATTATTTTGATAATCATTCCCATT 0 164 1 TAAACGCCATTTAAACGGGCGTTTTCTTTTTTGTTTAAATT 10 15 1 TGGCTATATTTTAATCTATTGTTTTACTATTTCGAATAAAA 11 102 1 TTCATTTTGCTTACCCAATTTTTTTCATTTTTCAATCTGAC 15 138 1 GCCAAATTCCTATTTCTTTTGTTTTCTTTGTTTTG 10 202 1 GAAGGGCGGATATTTCTGCCCTTTTGTTATTATAGAGCATC 15 30 1 AACTTAATACTAACCAAAATGTTTTGTTCTTTTTTCATACA 0 102 1 AAACCATAAATAAATAATCTTTTTTTTTCATAAGTTTGGTT 4 227 1 TTAATACACCTTTTTTGCTGTACCTTATGTGG 11 1 1 TAGAACTAATTAAGTCATTGTTTTTATTCGAAATAGTAAAA 11 123 0 ATGCCTTTCTTTAGAAAGGCATTTTTTTACTGAAATTTTAT 4 71 1 GTTATATATTTTACTAAATAATTTTTCTTTTGCTATATGAT 16 49 1 CTTTTTTGTTTAAATTCTTAGTTTTTCTGGTTCATTTTGAC 10 40 1 GTGCGGTAGATTATTTTCTTATTTTGATAGTAATCACTTAT 4 160 1 ATTTCTTCATTATTTATTGAATTTTAATAATACTTTGTTTA 5 47 0 AGAATGTTACTATTACAAAAATTTTAATCTATAAAAAATAG 5 114 1 TTGCTTGGATTAAATAGATAATTTTTGTCAATTTGACATGT 1 25 0 TATTTATTGTTTTTAAATCTGTTTTGGTATTCTAGATGTCT 1 132 0 ATTGCATTGTTTAGAAACGTATTTTTCTACAAGAAAGTGCG 4 124 1 TTGGCGGTGCATTGCCCCTTTTTTTATTCTTAGGGAAAGAA 10 114 0 ATATTTTATCATACGCCTAGATTTTCTTAAACAAACAAGGA 13 49 1 TGTTTAATTTAAAGATGAAGTTTTTTCTTTTATCGCAACAC 5 208 0 TTGTGCTTAGTTTAGACGATTTTTTGCTAGA 2 33 1 ATTTTCCTACATAAATTACCCTTTTAATGCTAATTGTGCTA 7 55 0 TATGCATAAAAATGTAATATTTTTTCATCTTATAAAGCATA 8 85 1 AATCCCAAAATTTCTTGGGATTTTTTATTAATAGCACTTGC 8 39 1 CATCGGAGATAATAGTACTACTTTTTATATTGTTTTGGAAT 0 202 0 AAAGATTCGATTTTTATTGAAAATTGTGCTT 2 0 1 *** * **** * * MAP Score: 29.7649 Motif 3 TATTGAATGTATGAAAAAAGAACAAAACATTTTGGT 0 114 0 ACCAAAACAGATTTAAAAACAATAAATAAAAAGGGC 1 145 1 AATTTTAGTTATAAAAAATTAATATAAGTGATTACT 4 188 0 ATTTTAATCTATAAAAAATAGAAATAAAATTTATCA 5 134 1 AGATGTCCTTATTTAAAAAAGATAGATTGAATGCCT 0 273 0 TGGCGTCAGATTGAAAAATGAAAAAAATTGGGTAA 15 148 0 AACCAAACTTATGAAAAAAAAAGATTATTTATTTAT 4 232 0 TACTTTGTTTATGGAAAATAAACATTGATAAATGCT 5 22 0 AATCATTCCCATTCCAAAACAATATAAAAAGTAGTA 0 192 1 TATTTACAATAGGAAAAATCAATACATCCTAGATCC 7 95 1 AAAACTAAGAATTTAAACAAAAAAGAAAACGCCCGT 10 29 0 ACAAAGTATTATTAAAATTCAATAAATAATGAAGAA 5 50 1 CCTTTTATACATGTCAAATTGACAAAAATTATCTAT 1 17 1 TAACAATCATATAGCAAAAGAAAAATTATTTAGTAA 16 59 0 TTTATTCGAAATAGTAAAACAATAGATTAAAATATA 11 106 0 CTAAAATGACAGAACAAACCAAAACAACTGACCAAG 0 33 0 CTATTACGGGATTAAAAACTAAATTATTACCCGTAA 11 164 0 AATCACGCTTAGACAAACACAACACAAGGAAGAAAA 4 273 1 ACCACATCAAAGTTAAACCAAAGAGATGTGTTGCGA 5 181 1 AAAGGCATTAATAGAAATTTAAGATTATAAATAAAC 4 43 0 ATAATTATGCATAAAAATGTAATATTTTTTCATCTT 8 80 1 ATTCTTAGGGAAAGAAAACTAAGAAAAAATCAGATC 10 94 0 TTTTCAGGTCATATAAAACTGATTGAACTTTTTATT 5 258 1 AGTGATTACTATCAAAATAAGAAAATAATCTACCGC 4 162 0 GCATGAATCAATAATAAAGCGACACTTTGAGCAGTC 12 28 0 CAAAACAAAGAAAACAAAAGAAATAGGAATTTG 10 204 0 ATTCTTCGCTAGCCTAAATAAAAATTCATCTTTTTT 9 127 0 ** **** ** * * MAP Score: 28.2105 Motif 4 CGAAATAATTATAAATAAATCTATTATTTTGATAATCAT 0 159 1 TTCCAAAACAATATAAAAAGTAGTACTATTATCTCCGAT 0 203 1 GATGTCCTTATTTAAAAAAGATAGATTGAATGCCTGAAT 0 269 0 TACATGTCAAATTGACAAAAATTATCTATTTAATCCAAG 1 24 1 ACCAAAACAGATTTAAAAACAATAAATAAAAAGGGCTTA 1 145 1 AAGCACAATTTTCAATAAAAATCGAATCTTT 2 2 0 ATTTAAGATTATAAATAAACTTGTAATGTCTAATAGAAA 4 24 0 TGAATTTTAGTTATAAAAAATTAATATAAGTGATTACTA 4 187 0 TATAACTAAAATTCATAAACCATAAATAAATAATCTTTT 4 211 1 CTAAGCGTGATTATAAAAACCAAACTTATGAAAAAAAAA 4 246 0 ATTTATAAGCATTTATCAATGTTTATTTTCCATAAACAA 5 15 1 TTTATTTTCCATAAACAAAGTATTATTAAAATTCAATAA 5 36 1 GAATGTTACTATTACAAAAATTTTAATCTATAAAAAATA 5 115 1 TCATAAAAATAGTGATAAATTTTATTTCTATTTTTTATA 5 143 0 CATCTTTAAATTAAACAAATCTAACTTTTTCAGGTCATA 5 232 1 TGAACTTTTTATTTATAAACGAGATATTA 5 281 1 AAATATTTTCCTACATAAATTACCCTTTTAATGCTAATT 7 61 0 AGGAAATTATTTGAAGAAAAATTGAGTTTTGTGAGTTGT 7 182 0 CCTGACAAATCTTTACAAAAATGAATTTTTGAGCTAATA 7 218 1 AGAAGACTTTTTATAAAAATATCGCCTAATGACAAGGAG 7 260 1 AAATTTTGGGATTTAAAAAACTTGATTGAAATCAACCGC 8 13 0 TTGCATAATTATGCATAAAAATGTAATATTTTTTCATCT 8 76 1 TGCGATTTAGATCGAAAAAATAAGTTTGAGTAGTTGGGG 9 69 0 TCATCATTTCATCGAAAAAAGATGAATTTTTATTTAGGC 9 113 1 CATAAGGTACAGCAAAAAAGGTGTATTAA 11 0 0 CTAGATTTTCTTAAACAAACAAGGAGTATCCAAA 13 65 1 TAACAATCATATAGCAAAAGAAAAATTATTTAGTAAAAT 16 56 0 ** * *** * * * * MAP Score: 21.1236 Motif 5 AAGAAAATAATCTACCGCACTTTCTTGTAGA 4 149 0 AACATTCTTTTTGACCTCACTAAAGAAGCTT 5 91 0 ACGACGATTTTTAACCGCACTTAAATACGAG 6 17 0 GTCGTATTTTTTGACCGCACTTTTCGCCCAT 6 43 1 TTGATTGAAATCAACCGCACT 8 0 0 AGATTTAAACGCCATTTAAACGGGC 10 4 1 GTGGTGTATATTATCCGTAATAGTTGCATGT 11 38 1 AACTATAAAATACACCGTAATAGTTTCATTT 11 72 1 AACTAAATTATTACCCGTAATAGAACTAATT 11 153 0 GACATTTTAACGCCATTTGCGCCGTT 12 79 0 ** ******** MAP Score: 4.42985 Motif 6 TTGTACGAAATAATTATAAATAAATCTATTATTTTG 0 154 1 AAGATGTCCTTATTTAAAAAAGATAGATTGAATGC 0 275 0 CAAAACAGATTTAAAAACAATAAATAAAAAGGGCTT 1 147 1 AAACTAAGCACAATTTTCAATAAAAATCGAATCTTT 2 10 0 AATAAACTTGTAATGTCTAATAGAAAAGCAGCGTAT 4 14 0 TCTACTCTTATAAAATTTCAGTAAAAAAATGCCTTT 4 85 0 TTTATGAATTTTAGTTATAAAAAATTAATATAAGTG 4 194 0 TAAAATTCATAAACCATAAATAAATAATCTTTTTTT 4 217 1 AAAACCAAACTTATGAAAAAAAAAGATTATTTATTT 4 234 0 AATACTTTGTTTATGGAAAATAAACATTGATAAATG 5 24 0 AAAGTATTATTAAAATTCAATAAATAATGAAGAAAT 5 52 1 ACAAAAATTTTAATCTATAAAAAATAGAAATAAAAT 5 128 1 AACTTCATCTTTAAATTAAACAAATCTAACTTTTTC 5 227 1 TATGCAAGTGCTATTAATAAAAAATCCCAAGAAATT 8 47 0 AGCACTTGCATAATTATGCATAAAAATGTAATATTT 8 71 1 TCTATGCTTTATAAGATGAAAAAATATTACATTTTT 8 92 0 TCTTAGCCCTTTAATTTTCAAAAACACA 9 2 0 CAAGATATGTTTATCTTACGTAAATTCTTAGCCCTT 9 27 0 TTTTTGCGATTTAGATCGAAAAAATAAGTTTGAGTA 9 76 0 AAAATCATCATTTCATCGAAAAAAGATGAATTTTTA 9 109 1 TTCATTTTGACTAAATCAACCAAAGATCTGATTTTT 10 70 1 CAAAACAAAGAAAACAAAAGAAATAGGAATT 10 206 0 ATACACCACATAAGGTACAGCAAAAAAGGTGTATTA 11 11 0 TATTGTTTTACTATTTCGAATAAAAACAATGACTTA 11 118 1 TACGCCTAGATTTTCTTAAACAAACAAGGAGTATCC 13 60 1 TCTATAATAACAAAAGGGCAGAAATATCCGCCCTTC 15 30 0 TACTTGATTATATATTGAAATAAATAACAATCATAT 16 83 0 *** * ** *** * MAP Score: 1.03977