AlignACE 3.0 10/20/99 AlignACE2 -i HI/HI_fusions008_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944236501 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 HI0408 171 ABC transporter, ATP-binding protein (yebM) #1 HI0500 300 conserved hypothetical protein #2 HI0501 167 high affinity ribose transport protein (rbsD) #3 HI1019 300 thiamin ABC transporter, periplasmic-binding protein (tbpA) #4 HI1157 71 ATP-binding protein protein (cydD) #5 HI1158 73 thioredoxin reductase (trxB) #6 HI1159 284 conserved hypothetical protein #7 HI1161 300 conserved hypothetical protein #8 HI1300 300 ABC transporter, ATP-binding protein Motif 1 ATGGTTGGGGAAAATAACGCATTTTTATAGAATTCT 0 124 0 ACCATTGTTGAAAACACGGCGATTTT 0 155 1 AATTCTTGAGAAAGTGCGGTCAATTTTTCAGTCAAA 1 186 0 CGTTTCGATAACAAAAAGGAGCTTTTAG 2 149 1 TAACTCTTTTAAAGAGGGGAACTTTTTCTATAATCA 4 34 1 TGATTTTAGCAAAGTGCGGAAGATTTTAGAAACGTT 6 25 0 CTTGTGAAAAAAATAATGGCTGATTTTAGCAAAGTG 6 45 0 TCACAAGGATAAAACATGGCTGATTTTCCTTTTATC 6 74 1 ACGCATAAAGAATCGGCGGATTTTTTGGCACTACTT 6 192 1 TTGCAGAACAATATCAAGGACAATTTATTCTTGGAA 6 235 1 AAGGTGCCCGAAGGGAAGGGGGATATAGGGATATGC 7 120 1 ATCAGATTCAAAAATTTGGAACATTTCTGTTAGCAT 8 46 0 TGAAGAAAGGAAGAAGCGGATTATTTGCGATTATAT 8 132 1 AATCCCATCGAATTGATGGGATTTTTTATGCAAACC 8 227 1 ACCGTATAGAATAGTGCGGTTAATTTTCACTGAATT 8 260 1 *** * ** **** MAP Score: 20.6194 Motif 2 CTAATCTACGTCAGCCCCTTTATTTTTTCA 3 73 1 TCTAACCAATTCCCCTCTTTTAACTCTTTT 4 14 1 TAGAAAAAGTTCCCCTCTTTAAAAGAGTTA 4 34 0 TCTAAAATCTTCCGCACTTTGCTAAAATCA 6 31 1 TGCCAAAAAATCCGCCGATTCTTTATGCGT 6 192 0 TCCCCCCATAAATGGGTGGA 7 0 1 TAATCTTGGCTCCACCCATTTATGGGGGGA 7 10 0 AAACTTGCCTTCCCCTGCTTGTGGGGGAAG 7 93 1 TGAACATTTATCCCCCCTCACCTTCGGCAG 7 227 1 CTTCGGCAGCTCCCCCCATAAATGGGTGGA 7 248 1 TTATCTTGGCTCCACCCATTTATGGGGGGA 7 258 0 GTTAGCATTCTCTGCCCTTTATATTCGATT 8 24 0 TCGCAAATAATCCGCTTCTTCCTTTCTTCA 8 132 0 ********** MAP Score: 15.1555 Motif 3 GATTATAAAGAAAATTCATTCCTATGGAAAAAGCATTATTC 0 46 1 TCTTATGTCGAATATTTAAGCGTTTGAATAATGCTTTTTCC 0 71 0 TAAGAGAGAAAATCTTGAGAATTCTATAAAAATGCGTTATT 0 107 1 AAAATCGCCGTGTTTTCAACAATGGTTGGGG 0 150 0 AGCTGATTATAATCTTGAGTCGTTTTCGATAA 1 1 0 TTTTCAGTCAAATTTTGTCGTTCTTGCGTGAGATGATGTAT 1 157 0 TGTGCAGAAAAATATTTTTCTTTCTCTGTTAAGGTTGTTTG 1 232 0 AAAAGAAATAAACTTTCTACATTTTCTGAAAAAATAAAGGG 3 88 0 AGCCGTTGGCAATCTTAGTAAATTTTAATACACTAGAAAGC 3 134 1 CTAGGAATATAACCTTATCTCCTTTTCGTCATTATTGCTGC 3 242 1 GATTATAGAAAAAGTTCCCCTCTTTAAAAGAGTTAAAAGAG 4 28 0 AGATTTTAGAAACGTTTTACCATTTCTATTA 6 0 0 ACGTTTCTAAAATCTTCCGCACTTTGCTAAAATCAGCCATT 6 26 1 TTTCCTAAGGATTGTTGCAGTATTTCAGTAAGATTTTGTTC 6 122 0 GGGTGGAGCCAAGATTAGAGGTTCTAAAATAAATAATGATA 7 23 1 AGGGGAAGGCAAGTTTTTAAAACCTCTAATAAGCAGAAGGC 7 68 0 GGAGTGATGAAATATTAAAAAACATAGATAATGTACCTAAA 7 169 1 TCAGATTCAAAAATTTGGAACATTTCTGTTAGCATTCTCTG 8 40 0 ** ** *** ** * MAP Score: 14.6036 Motif 4 AAAATCGCCGTGTTTTCAACAATGGTTGGGGAAAATAACGC 0 140 0 TTTGTAACCCCGTTAATTCTTGAGAAAGTGCGGTCAATTTTTC 1 193 0 AACCTCTAATCTTGGCTCCACCCATTTATGGGGGGA 7 3 0 ATAATGATAACTTGCCTTCTGCTTATTAGAGGTTTTAAAAACT 7 55 1 GTTTTAAAAACTTGCCTTCCCCTGCTTGTGGGGGAAGGTGCCC 7 86 1 TTCGCATATCCCTATATCCCCCTTCCCTTCGGGCACCTTCCCC 7 116 0 TGAAATTGAACATTTATCCCCCCTCACCTTCGGCAGCTCCCCC 7 221 1 TATCAATTATCTTGGCTCCACCCATTTATGGGGGGAGCTGCCG 7 251 0 * * *** * * *** MAP Score: 12.5553 Motif 5 AATGCGTTATTTTCCCCAACCATTGTTGAAAACACGGCGATTT 0 137 1 TTCCCCTCTTTTAACTCTTTTAAAGAGGGGAACTTTTTCTATA 4 23 1 TCCCCCCATAAATGGGTGGAGCCAAGATTAGAG 7 0 1 TTCGGGCACCTTCCCCCACAAGCAGGGGAAGGCAAGTTTTTAA 7 89 0 CATATCCCTATATCCCCCTTCCCTTCGGGCACCTTCCCCCACA 7 112 0 ATTGAACATTTATCCCCCCTCACCTTCGGCAGCTCCCCCCATA 7 225 1 CTTCGGCAGCTCCCCCCATAAATGGGTGGAGCCAAGATAATTG 7 248 1 GTTGGCGTAATGCCCCTGAAGAAAGGAAGAAGCGGATTATTTG 8 116 1 AAGTTGTTGATATACCCGTAATGCGTGTGCATCCGACATACCT 8 171 0 * **** * ** * * MAP Score: 10.6478 Motif 6 CGATAAGACAAATATAGATAACAAAAATAGA 2 115 0 AATATTAAAAAACATAGATAATGTACCTAAA 7 179 1 ATAGATAACAAAAATAGAAAAACAACTAAGA 2 102 0 TATTCGACATAAGAGAGAAAATCTTGAGAAT 0 98 1 TAGAGGTTCTAAAATAAATAATGATAACTTG 7 38 1 TTTGGTCGTGATTATAGAAAAAGTTCCCCTC 4 47 0 CGGCTTTTTAAAAAGAAATAAACTTTCTACA 3 108 0 CCCTAAAATAAAAAAGTTTTCAGCA 0 4 1 ATAATGACGAAAAGGAGATAAGGTTATATTC 3 246 0 AAACAACCTTAACAGAGAAAGAAAAATATTT 1 233 1 CTGCCTTTTAATCATAAATAAGGATGTAATA 3 279 1 TCCCCTCTTTAAAAGAGTTAAAAGAGGGGAA 4 23 0 TTTTTCAGAAAATGTAGAAAGTTTATTTCTT 3 96 1 TGGAGCCAAGATAATTGATAATATGGAATAG 7 274 1 ** ******** MAP Score: 9.95565 Motif 7 CATTCCTATGGAAAAAGCATTATTCAAACGCTTAAATA 0 62 1 GCCGTGTTTTCAACAATGGTTGGGGAAAATAACGCATT 0 137 0 CTACTAAGTTCATCAAATTTACTGGCAAGCTGATTATA 1 31 0 AAACCAGTTTGAACAACAAACAATTAAAGTACAGACTG 1 75 1 ACGCAAGAACGACAAAATTTGACTGAAAAATTGACCGC 1 169 1 ACAGAACTTTGAACAATCCAAACAACAATTGGGC 1 276 1 AAAATTCTCCGACCAAATTTACATTCAATCGGAATCGG 2 18 0 GTTTCGATAAGACAAATATAGATAACAAAAATAGAAAA 2 112 0 GATTAAAAGGCAGCAATAATGACGAAAAGGAGATAAGG 3 254 0 GAGATCAACGAACAAAATCTTACTGAAATACTGCAACA 6 113 1 TGAAATACTGCAACAATCCTTAGGAAAAACCACTTGTC 6 136 1 TGCGTTGGCGCGTAAAAATTGATGACAAGTGGTTTTTC 6 159 0 GGCACTACTTGAGCAAGTTGCAGAACAATATCAAGGAC 6 218 1 ACGGGTATATCAACAACTTTGATTTAAGAGAGAATCCC 8 195 1 ATACGGTTTGCATAAAAAATCCCATCAATTCGATGGGA 8 229 0 AGCTGCCCCATAAAAATTCAGTGAAAATTAACCGCA 8 274 0 ** *** * * *** MAP Score: 8.42217 Motif 8 CATAGGAATGAATTTTCTTTATAATCTGTAGTCT 0 38 0 AAGTGCGGTCAATTTTTCAGTCAAATTTTGTCGT 1 177 0 AAAGAAAAATATTTTTCTGCACAACAACAGAACT 1 250 1 TTGGTCGGAGAATTTTTTATCCTATCTAGAAATT 2 40 1 CCTATCTAGAAATTTTGTGATCAATATCCCAAAT 2 60 1 TTGTTTTTCTATTTTTGTTATCTATATTTGTCTT 2 108 1 TGTTATCTATATTTGTCTTATCGAAACGTTTCGA 2 123 1 CTAAAAGCTCCTTTTTGTTATCGAAACGTTTCGA 2 143 0 AGTTATCTTCATTTTTATAGACTAGTGCACTTGC 3 40 1 ATCTTAGTAAATTTTAATACACTAGAAAGCCTAG 3 145 1 AATCAGCCATTATTTTTTTCACAAGGATAAAACA 6 56 1 CTTGTCATCAATTTTTACGCGCCAACGCATAAAG 6 168 1 GAATCGGCGGATTTTTTGGCACTACTTGAGCAAG 6 201 1 TCTTTTTCACAATTTACTTTTCCAAGAATAAATT 6 256 0 ATCACTCCAAAATTTTATTTCGCATATCCCTATA 7 143 0 TTTCAACCTAAATTGTTTTAGGTACATTATCTAT 7 192 0 TTTTCACTGAATTTTTATGGGGCAGCT 8 283 1 ****** ** * * MAP Score: 8.34299 Motif 9 ATCTTGAGAATTCTATAAAAATGCGTTATTTT 0 118 1 AAAAACCAGTTTGAACAACAAACAATTAAAGT 1 73 1 TTCTGTTGTTGTGCAGAAAAATATTTTTCTTT 1 250 0 TCAATCGGAATCGGAGAATAAA 2 0 0 AATTTCTAGATAGGATAAAAAATTCTCCGACC 2 42 0 ATCGAAACGTTTCGATAACAAAAAGGAGCTTT 2 142 1 AAGTGCACTAGTCTATAAAAATGAAGATAACT 3 40 0 TTTCTACATTTTCTGAAAAAATAAAGGGGCTG 3 84 0 TGTTTTATCCTTGTGAAAAAAATAATGGCTGA 6 58 0 CTTACTGAAATACTGCAACAATCCTTAGGAAA 6 131 1 TTATGCGTTGGCGCGTAAAAATTGATGACAAG 6 168 0 CTTGAGCAAGTTGCAGAACAATATCAAGGACA 6 225 1 AATTTACTTTTCCAAGAATAAATTGTCCTTGA 6 248 0 AGATTAGAGGTTCTAAAATAAATAATGATAAC 7 34 1 TCTATACGGTTTGCATAAAAAATCCCATCAAT 8 238 0 *** * ****** MAP Score: 5.5197 Motif 10 GATTATAATCAGCTTGCCAGTAAATTTGATGAACTTAGTAGCATTA 1 28 1 AAGTGCGGTCAATTTTTCAGTCAAATTTTGTCGTTCTTGCGTGAGA 1 165 0 GTTACAAACAACCTTAACAGAGAAAGAAAAATATTTTTCTGCACAA 1 228 1 ATTGATCACAAAATTTCTAGATAGGATAAAAAATTCTCCGACCAAA 2 39 0 CCAAATTTGAAATTTCTTAGTTGTTTTTCTATTTTTGTTATCTATA 2 88 1 CAGCCCCTTTATTTTTTCAGAAAATGTAGAAAGTTTATTTCTTTTT 3 84 1 ATACGCTGAGATCATACCCGTGAACCTGAAACAGTTAATACTGACG 3 189 1 CAAAGTGCGGAAGATTTTAGAAACGTTTTACCATTTCTATTA 6 6 0 GGATTGTTGCAGTATTTCAGTAAGATTTTGTTCGTTGATCTCAACG 6 109 0 TTCAACCTAAATTGTTTTAGGTACATTATCTATGTTTTTTAATATT 7 179 0 AGGGCAGAGAATGCTAACAGAAATGTTCCAAATTTTTGAATCTGAT 8 36 1 * * *** * * *** MAP Score: 5.24575 Motif 11 AGTTGCAGAACAATATCAAGGACAATTTATTCTTGG 6 233 1 TGGGTGGAGCCAAGATAATTGATAATATGGAATAGA 7 270 1 CTTAAATATTCGACATAAGAGAGAAAATCTTGAGAA 0 92 1 CTGCCCCATAAAAATTCAGTGAAAATTAACCGCACT 8 272 0 AAGAACGACAAAATTTGACTGAAAAATTGACCGCAC 1 173 1 TTCAGACTACAGATTATAAAGAAAATTCATTCCTAT 0 35 1 ATGAAATATTAAAAAACATAGATAATGTACCTAAAA 7 175 1 TCAACAACTTTGATTTAAGAGAGAATCCCATCGAAT 8 204 1 TTTTGTTCGTTGATCTCAACGATAAAAGGAAAATCA 6 94 0 GGTTACAAACAACCTTAACAGAGAAAGAAAAATATT 1 227 1 TGTTTTGGTCGTGATTATAGAAAAAGTTCCCCTCT 4 46 0 GACATACCTGCAATATAATCGCAAATAATCCGCTTC 8 144 0 AAACAATTAAAGTACAGACTGAAAATCAAGGACTGC 1 92 1 AAATATAGATAACAAAAATAGAAAAACAACTAAGAA 2 101 0 TCAACGAACAAAATCTTACTGAAATACTGCAACAAT 6 117 1 *** * * ** *** MAP Score: 4.95943 Motif 12 GTTATTTTCCCCAACCATTGTTGAAAACACGG 0 142 1 TTTGCTAAAATCAGCCATTATTTTTTTCACAA 6 48 1 AAAAGGAAAATCAGCCATGTTTTATCCTTGTG 6 75 0 AAACCACTTGTCATCAATTTTTACGCGCCAAC 6 162 1 AATCTTGGCTCCACCCATTTATGGGGGGA 7 7 0 TATCTTGGCTCCACCCATTTATGGGGGGAGCT 7 255 0 *** ***** ** MAP Score: 3.8678 Motif 13 TGAATGCTGAAAACTTTTTTATTTTAGGG 0 6 0 AGATTATAAAGAAAATTCATTCCTATGGAAAAA 0 45 1 TAGAATTCTCAAGATTTTCTCTCTTATGTCGAA 0 100 0 ATTTTTCAGTCAAATTTTGTCGTTCTTGCGTGA 1 167 0 AATTTGGTCGGAGAATTTTTTATCCTATCTAGA 2 37 1 ATCCTATCTAGAAATTTTGTGATCAATATCCCA 2 58 1 TCCCAAATTTGAAATTTCTTAGTTGTTTTTCTA 2 86 1 AGAAAATGTAGAAAGTTTATTTCTTTTTAAAAA 3 102 1 GCAAAAAGTTTATAATCAGTAAAATG 5 3 1 CAATATCAAGGACAATTTATTCTTGGAAAAGTA 6 243 1 TCATCACTCCAAAATTTTATTTCGCATATCCCT 7 146 0 GGTTGAAATTGAACATTTATCCCCCCTCACCTT 7 218 1 CAAAAATTTGGAACATTTCTGTTAGCATTCTCT 8 41 0 ATCTGATCCAGAGCGTTTATTACCTCGAAATAC 8 75 1 ******** * * MAP Score: 1.59636 Motif 14 GCATTATTCAAACGCTTAAATATTCGACATAAGAG 0 78 1 TTATCGAAAACGACTCAAGATTATAATCAGCTT 1 8 1 TTGAACAACAAACAATTAAAGTACAGACTGAAAAT 1 83 1 GAACGTGATGAACAAATACATCATCTCACGCAAGA 1 142 1 GTCTTATCGAAACGTTTCGATAACAAAAAGGAGCT 2 137 1 GAAATGGTAAAACGTTTCTAAAATCTTCCGCACTT 6 15 1 TTTACGCGCCAACGCATAAAGAATCGGCGGATTTT 6 181 1 GTAGATACTCAACGAATCGAATATAAAGGGCAGAG 8 10 1 **** ** * *** MAP Score: 1.09878 Motif 15 GTGTTTTCAACAATGGTTGGGGAAAATAACGCATTTTT 0 134 0 TTATCGAAAACGACTCAAGATTATAATCAGCTTGC 1 7 1 TTTGAACAACAAACAATTAAAGTACAGACTGAAAATCA 1 82 1 TCGTTTAACTGAACGTGATGAACAAATACATCATCTCA 1 132 1 TTTGTTATCGAAACGTTTCGATAAGACAAATATAGATA 2 126 0 TTTTTTCAGAAAATGTAGAAAGTTTATTTCTTTTTAAA 3 95 1 AGTCGGGGTGCAATACGCTGAGATCATACCCGTGAACC 3 177 1 ATAATGACGAAAAGGAGATAAGGTTATATTCCTAGTTT 3 239 0 TCGTTGATCTCAACGATAAAAGGAAAATCAGCCATGTT 6 86 0 TCCCCCCATAAATGGGTGGAGCCAAGATTAGAGGTTC 7 9 1 GAAGGTGCCCGAAGGGAAGGGGGATATAGGGATATGCG 7 119 1 AATGTACCTAAAACAATTTAGGTTGAAATTGAACATTT 7 198 1 CTCCCCCCATAAATGGGTGGAGCCAAGATAATTGATAA 7 257 1 GTAGATACTCAACGAATCGAATATAAAGGGCAGAGAA 8 9 1 ***** *** * * MAP Score: 0.51092 Motif 16 ATAGAAAAAGTTCCCCTCTTTAAAAGAGTTAAAAGAGGG 4 26 0 CTAATCTTGGCTCCACCCATTTATGGGGGGA 7 2 0 AAAACTTGCCTTCCCCTGCTTGTGGGGGAAGGTGCCCGA 7 92 1 TATCCCTATATCCCCCTTCCCTTCGGGCACCTTCCCCCA 7 114 0 GAACATTTATCCCCCCTCACCTTCGGCAGCTCCCCCCAT 7 228 1 CCTTCGGCAGCTCCCCCCATAAATGGGTGGAGCCAAGAT 7 247 1 GTTGGCGTAATGCCCCTGAAGAAAGGAAGAAGCGGATTA 8 116 1 * ***** * ** * MAP Score: 0.385212 Motif 17 GAATTCTATAAAAATGCGTTATTTTCCCCAACCATTGTT 0 125 1 ATCTTCTAACCAATTCCCCTCTTTTAACT 4 0 1 TTTGGTCGTGATTATAGAAAAAGTTCCCCTCTTTAAAAG 4 39 0 AATGGTAAAACGTTTCTAAAATCTTCCGCACTTTGCTAA 6 17 1 TATCCCCCTTCCCTTCGGGCACCTTCCCCCACAAGCAGG 7 106 0 AATTTTATTTCGCATATCCCTATATCCCCCTTCCCTTCG 7 128 0 ATTTAGGTTGAAATTGAACATTTATCCCCCCTCACCTTC 7 213 1 TATCCCCCCTCACCTTCGGCAGCTCCCCCCATAAATGGG 7 235 1 AATACTGCAAATCGTTGGCGTAATGCCCCTGAAGAAAGG 8 103 1 * * * * ****** MAP Score: 0.114579