AlignACE 3.0 10/20/99 AlignACE2 -i HI/HI_fusions017_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944236795 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 HI0062 258 dnaK suppressor protein (dksA) #1 HI0063 247 poly(A) polymerase (pcnB) #2 HI0265 82 dihydroneopterin aldolase, putative #3 HI1334 126 cell division protein (ftsJ) #4 HI1335 90 cell division protein (ftsH) #5 HI1336 111 dihydropteroate synthase (folP-1) #6 HI1464 111 dihydropteroate synthase (folP-2) #7 HI1465 137 cell division ftsH-related protein Motif 1 TGAAATCCACGCTTAATTCTGTATGTATTAGGAGTGAGA 0 228 1 AAAAAAGTGCGGTTAATTTTAACCGCACTTTTGTATTTT 1 23 0 AAGGTTTCCTCTAAAATTATTGTAGGCGTAT 2 61 0 AAAAAAGAGCGGTTGATTTTCTCAATGTTTTTTACTGAT 3 23 1 TAGTCGTTTCGCCTATATTTGGGTACAATCTGTCAAATT 3 81 0 TGCTTTGATAGCTTTTCATTGCTAATGATGTGTAGTATC 4 11 1 TCTTCGGAAAGGCTTTATTTTTTCCTAATGATTTTGTTC 5 24 1 TTTTGTTCTTGGATGTATTTCGCTATAATCGCCCACCAA 5 55 1 AAAATGCGGTTAATTTTTAGAGTGATTTTGGTGGGC 5 85 0 TCTTCGGAAAGGCTTTATTTTTTCCTAATGATTTTGTTC 6 24 1 TTTTGTTCTTGGATGTATTTCGCTATAATCGCCCACCAA 6 55 1 AAAATGCGGTTAATTTTTAGAGTGATTTTGGTGGGC 6 85 0 TGCATCGATTTCATCATAATACCATTGATT 7 117 0 ** * *** **** MAP Score: 22.3507 Motif 2 AAATTTTGCGATCCATATCGTAAAAATAAATTTTTCAGG 0 81 1 TTTCAGGAAAATTTACTTGCTAAAACAAACAACTTCTGA 0 113 1 AGCAGTCAGGAACAAACTAAAATAACAAGACAGGAAGTC 0 188 1 GAAAAATACAAAAGTGCGGTTAAAATTAACCGCACTTTT 1 21 1 GAGCCAAGTCATTTATTTCCAACAACAAAACGGAGTAAA 1 111 1 CTTGCCAAACAAATTTTTGATATAAGTAAGAATAATTTA 1 146 0 AAAAAATCAAAAGAGGTTGCCAAAACAAGTGCTCATTCT 1 191 1 AAGGATTCCTAATAAAAAAGAGCGGTTGA 3 0 1 AAATCAGTAAAAAACATTGAGAAAATCAACCGCTCTTTT 3 25 0 AATATAGGCGAAACGACTACAAAAAATAGAAGATT 3 101 1 CAAGAACAAAATCATTAGGAAAAAATAAAGCCTTTCCGA 5 27 0 GATTATAGCGAAATACATCCAAGAACAAAATCATTAGGA 5 46 0 TCGCCCACCAAAATCACTCTAAAAATTAACCGCATTTT 5 83 1 CAAGAACAAAATCATTAGGAAAAAATAAAGCCTTTCCGA 6 27 0 GATTATAGCGAAATACATCCAAGAACAAAATCATTAGGA 6 46 0 TCGCCCACCAAAATCACTCTAAAAATTAACCGCATTTT 6 83 1 CCCAAAAGTTAAATCTAGGTTAAAAAAAGGTTACAAGTA 7 19 1 ** ** * ** *** MAP Score: 22.1945 Motif 3 CAAGTAAATTTTCCTGAAAAATTTATTTTTAC 0 100 0 GAAAATTTACTTGCTAAAACAAACAACTTCTG 0 119 1 ATATTTATACCGCCCGCAAAAATTGGGTTCCT 0 151 1 AAAAATTGGGTTCCTAAAATAGCAGTCAGGAA 0 168 1 CTCTCACTCCTAATACATACAGAATTAA 0 240 0 AGTCATTTATTTCCAACAACAAAACGGAGTAA 1 117 1 TTTGTCTTCTTGCCAAACAAATTTTTGATATA 1 161 0 TCAAAAGAGGTTGCCAAAACAAGTGCTCATTC 1 197 1 TTTGCACTCCAGCAAGAAAAACTGTTCG 2 6 1 TGATAGCATACGCCTACAATAATTTTAGAGGA 2 54 1 AAGGATTCCTAATAAAAAAGAGCGGTT 3 5 1 ATAGGCGAAACGACTACAAAAAATAGAAGATT 3 104 1 AATAAAGCCTTTCCGAAGAAAGGCTTTGATGA 5 11 0 TCGCTATAATCGCCCACCAAAATCACTCTAAA 5 74 1 AATAAAGCCTTTCCGAAGAAAGGCTTTGATGA 6 11 0 TCGCTATAATCGCCCACCAAAATCACTCTAAA 6 74 1 **** ** **** MAP Score: 16.0143 Motif 4 TTAAATATGCAAACGGTTGCTTCAAATTTTGCGATCCATA 0 58 1 TTTAGCAAGTAAATTTTCCTGAAAAATTTATTTTTACGAT 0 97 0 TCTGATATTTATACCGCCCGCAAAAATTGGGTTCCTAAAA 0 147 1 TTGGGTTCCTAAAATAGCAGTCAGGAACAAACTAAAATAA 0 173 1 TGAAAAATACAAAAGTGCGGTTAAAATTAACCGCACTTTT 1 20 1 AAAAAAATCAAAAGAGGTTGCCAAAACAAGTGCTCATTCT 1 190 1 GAAATCAGTAAAAAACATTGAGAAAATCAACCGCTCTTTT 3 25 0 AATATAGGCGAAACGACTACAAAAAATAGAAGATT 3 101 1 TCCTAAGTTAAAAAATTTCGTCACAAGATACTACACATCA 4 36 0 CTCATCAAAGCCTTTCTTCGGAAAGGCTTTATTTTT 5 6 1 TCCAAGAACAAAATCATTAGGAAAAAATAAAGCCTTTCCG 5 28 0 ATCGCCCACCAAAATCACTCTAAAAATTAACCGCATTTT 5 82 1 CTCATCAAAGCCTTTCTTCGGAAAGGCTTTATTTTT 6 6 1 TCCAAGAACAAAATCATTAGGAAAAAATAAAGCCTTTCCG 6 28 0 GTATTTCGCTATAATCGCCCACCAAAATCACTCTAAAAAT 6 69 1 AAATTGCTTCCCAAAAGTTAAATCTAGGTT 7 0 1 TACAAGTATAAAAAAAATACAACAAATTAAGAAATGAAAA 7 50 1 *** * * **** * MAP Score: 14.7349 Motif 5 TACATCCAAGAACAAAATCATTAGGAAAAAATAAAGCCTT 5 32 0 TACATCCAAGAACAAAATCATTAGGAAAAAATAAAGCCTT 6 32 0 ATCATTAGCAATGAAAAGCTATCAAAGCAA 4 0 0 ATAATCGCCCACCAAAATCACTCTAAAAATTAACCGCATT 6 79 1 ATAATCGCCCACCAAAATCACTCTAAAAATTAACCGCATT 5 79 1 CTCATCAAAGCCTTTCTTCGGAAAGGCTTTATT 6 3 1 CTCATCAAAGCCTTTCTTCGGAAAGGCTTTATT 5 3 1 AAATTAAGAAATGAAAATCATTATCATTTAATGTCTATTA 7 73 1 AGACAAAAAAATCAAAAGAGGTTGCCAAAACAAGTGCTCA 1 186 1 GCACTCCAGCAAGAAAAACTGTTCGTTATTCTACCCAAAA 2 13 1 TTAAAAATGCAGGAAAATCCACTTGCCTTTTTCTTTACAA 1 66 1 TAAATTTTTCAGGAAAATTTACTTGCTAAAACAAACAACT 0 107 1 AATTGAAATCAGTAAAAAACATTGAGAAAATCAACCGCTC 3 29 0 TTTTCTTTACAAGAAAAGAGCCAAGTCATTTATTTCCAAC 1 94 1 * ***** * * ** MAP Score: 13.0461 Motif 6 ACAAAATCATTAGGAAAAAATAAAGCCTTTCC 5 29 0 ACAAAATCATTAGGAAAAAATAAAGCCTTTCC 6 29 0 ATTTTTGATATAAGTAAGAATAATTTACTCCG 1 141 0 AAAAATTTGTTTGGCAAGAAGACAAAAAAATC 1 167 1 AAGTTAAATCTAGGTTAAAAAAAGGTTACAAG 7 24 1 TAATTGAAATCAGTAAAAAACATTGAGAAAAT 3 38 0 GCTATCAATTTTGGGTAGAATAACGAACAGTT 2 29 0 GGCTCTTTTCTTGTAAAGAAAAAGGCAAGTGG 1 84 0 TAGCGAAATACATCCAAGAACAAAATCATTAG 5 48 0 TAGCGAAATACATCCAAGAACAAAATCATTAG 6 48 0 CTACCTTTCCTAAGTTAAAAAATTTCGTCACA 4 51 0 AAGGATTCCTAATAAAAAAGAGCGGTTGATT 3 9 1 TTCATTCTATTGAAAAATACAAAAGTGCG 1 7 1 TTTGCACTCCAGCAAGAAAAACTGTTCGTT 2 8 1 TACACATCATTAGCAATGAAAAGCTATCAAAG 4 13 0 AAAAAGGTTACAAGTATAAAAAAAATACAACA 7 42 1 GGCGAAACGACTACAAAAAATAGAAGATT 3 107 1 GGAAAATTTACTTGCTAAAACAAACAACTTCT 0 118 1 TTTTATAAAAGATTAATTCCAG 0 0 1 **** ***** * MAP Score: 11.3113 Motif 7 TTTTTACGATATGGATCGCAAAATTTGAAGCAA 0 74 0 TCAGGAAAATTTACTTGCTAAAACAAACAACTT 0 115 1 CCGCAAAAATTGGGTTCCTAAAATAGCAGTCAG 0 164 1 TCCTGCATTTTTAAATGCAAAAAAGTGCGGTTA 1 47 0 ACTTGCCTTTTTCTTTACAAGAAAAGAGCCAAG 1 86 1 GCCAAGTCATTTATTTCCAACAACAAAACGGAG 1 113 1 ACTGTTCGTTATTCTACCCAAAATTGATAGCAT 2 30 1 AAGGATTCCTAATAAAAAAGAGCG 3 1 1 TTGATAGCTTTTCATTGCTAATGATGTGTAGTA 4 15 1 CATCAAAGCCTTTCTTCGGAAAGGCTTTATTTT 5 12 1 AAAGGCTTTATTTTTTCCTAATGATTTTGTTCT 5 31 1 TTATAGCGAAATACATCCAAGAACAAAATCATT 5 50 0 CATCAAAGCCTTTCTTCGGAAAGGCTTTATTTT 6 12 1 AAAGGCTTTATTTTTTCCTAATGATTTTGTTCT 6 31 1 TTATAGCGAAATACATCCAAGAACAAAATCATT 6 50 0 AAATTGCTTCCCAAAAGTTAAATCTA 7 3 1 ** **** **** MAP Score: 11.2156 Motif 8 CCTGAAAAATTTATTTTTACGATATGGATC 0 90 0 ACCGCACTTTTGTATTTTTCAATAGAATGA 1 11 0 CCACTTGCCTTTTTCTTTACAAGAAAAGAG 1 84 1 CCTCTTTTGATTTTTTTGTCTTCTTGCCAA 1 177 0 AATCAACCGCTCTTTTTTATTAGGAATCCT 3 11 0 AAAGAGCGGTTGATTTTCTCAATGTTTTTT 3 26 1 ATTTTCTCAATGTTTTTTACTGATTTCAAT 3 38 1 AGCTTCGGCTTGAATTTGACAGATTGTACC 3 69 1 CGGAAAGGCTTTATTTTTTCCTAATGATTT 5 28 1 TTTTTCCTAATGATTTTGTTCTTGGATGTA 5 42 1 CGGAAAGGCTTTATTTTTTCCTAATGATTT 6 28 1 TTTTTCCTAATGATTTTGTTCTTGGATGTA 6 42 1 ATTTTTAGAGTGATTTTGGTGGGCGATTAT 6 79 0 ATTTGTTGTATTTTTTTTATACTTGTAACC 7 47 0 TAAATGATAATGATTTTCATTTCTTAATTT 7 73 0 ********** MAP Score: 10.17 Motif 9 TTTTATAAAAGATTAATTCCAGCCTCTCTAAG 0 5 1 TTTAAATATGCAAACGGTTGCTTCAAATTTTGCGATC 0 57 1 ATACCGCCCGCAAAAATTGGGTTCCTAAAATAGCAGT 0 157 1 CAAAACGGAGTAAATTATTCTTACTTATATCAAAAAT 1 136 1 TTACTTATATCAAAAATTTGTTTGGCAAGAAGACAAA 1 156 1 TTTCCTAAGTTAAAAAATTTCGTCACAAGATACTACA 4 41 0 CTCATCAAAGCCTTTCTTCGGAAAGGCTTTAT 5 5 1 TATTTTTTCCTAATGATTTTGTTCTTGGATGTATTTC 5 39 1 CTCATCAAAGCCTTTCTTCGGAAAGGCTTTAT 6 5 1 TATTTTTTCCTAATGATTTTGTTCTTGGATGTATTTC 6 39 1 **** ** *** * MAP Score: 7.94164 Motif 10 TTGTTTTAGCAAGTAAATTTTCCTGAAAAATTTATTTTTA 0 101 0 AACTTCTGATATTTATACCGCCCGCAAAAATTGGGTTCCT 0 143 1 ACTTTTTTGCATTTAAAAATGCAGGAAAATCCACTTGCCT 1 54 1 GGAGTAAATTATTCTTACTTATATCAAAAATTTGTTTGGC 1 142 1 AGACAAAAAAATCAAAAGAGGTTGCCAAAACAAGTGCTCA 1 186 1 GCCGAAGCTAATTGAAATCAGTAAAAAACATTGAGAAAAT 3 38 0 ACCCAAATATAGGCGAAACGACTACAAAAAATAGAAGATT 3 96 1 TACATCCAAGAACAAAATCATTAGGAAAAAATAAAGCCTT 5 32 0 GATGTATTTCGCTATAATCGCCCACCAAAATCACTCTAAA 5 66 1 TACATCCAAGAACAAAATCATTAGGAAAAAATAAAGCCTT 6 32 0 GATGTATTTCGCTATAATCGCCCACCAAAATCACTCTAAA 6 66 1 GCTTCCCAAAAGTTAAATCTAGGTTAAAAAAAGGTTACAA 7 15 1 AGGTTAAAAAAAGGTTACAAGTATAAAAAAAATACAACAA 7 35 1 * ** * * ***** MAP Score: 5.95142 Motif 11 AAAAGATTAATTCCAGCCTCTCTAAGCCTAGGCTAGTTTTATT 0 16 1 TAACCGCACTTTTTTGCATTTAAAAATGCAGGAAAATCCACTT 1 47 1 TTGCTTTGATAGCTTTTCATTGCTAATGATGTGTAGTAT 4 6 1 CTCATCAAAGCCTTTCTTCGGAAAGGCTTTATTTTTT 5 4 1 ATTTTGTTCTTGGATGTATTTCGCTATAATCGCCCACCAAAAT 5 54 1 CTCATCAAAGCCTTTCTTCGGAAAGGCTTTATTTTTT 6 4 1 ATTTTGTTCTTGGATGTATTTCGCTATAATCGCCCACCAAAAT 6 54 1 * ** **** * ** MAP Score: 4.87892 Motif 12 AAAAGATTAATTCCAGCCTCTCTAAGCCTAGGCTAGTTTTAT 0 16 1 TAACCGCACTTTTTTGCATTTAAAAATGCAGGAAAATCCACT 1 47 1 TTGCTTTGATAGCTTTTCATTGCTAATGATGTGTAGTA 4 6 1 CTCATCAAAGCCTTTCTTCGGAAAGGCTTTATTTTT 5 4 1 CTCATCAAAGCCTTTCTTCGGAAAGGCTTTATTTTT 6 4 1 * ** * ** * *** MAP Score: 2.23465