AlignACE 3.0 10/20/99 AlignACE2 -i HI/HI_operons009_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944237418 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 HI0098 216 iron(III) ABC transporter, permease protein (hitB) #1 HI0129 300 H. influenzae predicted coding region HI0129 #2 HI0498 254 spermidine/putrescine ABC transporter, periplasmic-binding protein (potD) #3 HI1019 300 thiamin ABC transporter, periplasmic-binding protein (tbpA) #4 HI1344 72 spermidine/putrescine ABC transporter, periplasmic-binding protein (potD) #5 HI1345 25 spermidine/putrescine ABC transporter, permease protein (potC) #6 HI1347 268 spermidine/putrescine ABC transporter, ATP-binding protein (potA) #7 HI1382 90 phosphate ABC transporter, permease protein (pstC) #8 HI1383 300 phosphate ABC transporter, periplasmic-binding protein (pstS) #9 HI1475 227 H. influenzae predicted coding region HI1475 #10 HI1525 186 molybdate-binding periplasmic protein, putative #11 HI1692 173 molybdenum ABC transporter, permease protein (modB) #12 HI1693 137 molybdenum ABC transporter, periplasmic-binding protein (modA) Motif 1 ACGGCTTTTTAAAAAGAAATAAACTTTCTACAT 3 107 0 GTTTATGCATAAAATGAAAAAAAATCTTATTAC 8 70 1 CAAAACAAAGAAAACAAAAGAAATAGGAATTTG 9 204 0 GTCAGATTGAAAAATGAAAAAAATTGGGTAAGC 11 146 0 CAATATTTATAAAATTAACGAAGTAAAATTCAT 6 78 1 TGCCGTTCATAAAAATAACGAGAAATTTAACCG 6 119 0 TGATTTAGTCAAAATGAACCAGAAAAACTAAGA 9 55 0 TTAGGGAAAGAAAACTAAGAAAAAATCAGATCT 9 93 0 TAACTCATTGTAAATTAAAGAAATCTATACAAA 3 12 0 TCATTTTGACTAAATCAACCAAAGATCTGATTT 9 71 1 TTTTTCTCGTTAAACTAAAAAAGATATTTTTAA 6 23 0 AAAATAATCCAAAAATAAGCAGAATGCATTATG 1 192 0 AAGTGCGGTATAAAATAAAGAGATT 7 2 0 ACTAAGAATTTAAACAAAAAAGAAAACGCCCGT 9 29 0 ACCTAAGGTTAAAACGTAATAAGATTTTTTTTC 8 85 0 CTAGTGTATTAAAATTTACTAAGATTGCCAACG 3 137 0 TCTTTCCCTAAGAATAAAAAAAGGGGCAATGCA 9 115 1 ATTTTATGCATAAACATAACAAATTCTCCTTGA 8 52 0 ATTTTTTCAGAAAATGTAGAAAGTTTATTTCTT 3 94 1 AATAATGACGAAAAGGAGATAAGGTTATATTCC 3 245 0 GACTTAATTTTGAAACAACAAAAAAGGTTGGGA 10 26 0 AGATATTTTTAAAAGGAGCGAGAAT 6 2 0 TTAATGCCTTAGAAAGTAAAAAACTGCCGTTCA 6 143 0 GAGTAGAAATAAAACCTGCAAGACTGCAGGGGC 6 230 0 TCCCTTAGGAAAAAACTGGCAAAATCTTACCCC 2 16 1 TGCCATGTCATGAAATTAGAAAAAAAATCGATT 10 65 1 **** *** *** MAP Score: 22.9203 Motif 2 GAGGCAAAGTTAAATCCTTTTAGGAATGTGAACTTTTCA 0 95 0 ACCGCCATTCTGGCTCACTTTACTTATCATCTTAATCGG 0 138 1 AAACTTTCCATAATGCATTCTGCTTATTTTTGGATTATT 1 184 1 GGGAAATATGTCAAACCTTTTAGAAAAAAATGCTATACT 2 53 1 GAAATAAACTTTCTACATTTTCTGAAAAAATAAAGGGGC 3 86 0 AATATAACCTTATCTCCTTTTCGTCATTATTGCTGCCTT 3 247 1 TCGTCATTATTGCTGCCTTTTAATCATAAATAAGGATGT 3 267 1 ATTCTCGCTCCTTTTAAAAATATCTTTTTTAGT 6 4 1 GAATTTTACTTCGTTAATTTTATAAATATTGTTATATAT 6 70 0 TCTAAGGCATTAAGTCCTTTTCATTATTAACAATTCACT 6 163 1 CTTTATTTTATACCGCACTTTATACAAAACCTAGCACTT 7 15 1 GCGGTTATCTTAAATAATTTTGGAAAATACTT 7 68 1 AATAAGATTTTTTTTCATTTTATGCATAAACATAACAAA 8 62 0 GGCACCAAAATCAACCGTTTTTGCAATAATTTGCTGTTG 8 259 0 TTAGTTTTTCTGGTTCATTTTGACTAAATCAACCAAAGA 9 57 1 TGGCGGTGCATTGCCCCTTTTTTTATTCTTAGGGAAAGA 9 115 0 AATAATTCATTATACAATTTTATATATATCGATTTTCGC 10 131 1 GGGCGGATATTTCTGCCCTTTTGTTATTATAGAGCATCT 11 33 1 TCATTTTGCTTACCCAATTTTTTTCATTTTTCAATCTGA 11 139 1 * ****** ** * MAP Score: 19.5583 Motif 3 AGTCTTGCAGGTTTTATTTCTACTCAGTACCAAA 6 238 1 TTAAACGGGCGTTTTCTTTTTTGTTTAAATTCTT 9 25 1 TATTTCTTTTGTTTTCTTTGTTTTG 9 212 1 AGGAGATAAGGTTATATTCCTAGTTTCCTACGTC 3 231 0 TTTACAATGAGTTATCTTCATTTTTATAGACTAG 3 31 1 ATATCAAGATGTTTTCTATTTTTCTCGTTAAACT 6 40 0 AGGAGAATTTGTTATGTTTATGCATAAAATGAAA 8 55 1 TAAATTTCTCGTTATTTTTATGAACGGCAGTTTT 6 123 1 ATGAACGGCAGTTTTTTACTTTCTAAGGCATTAA 6 142 1 AAGCCTAAGCGTTATATATTTTACTAAATAATTT 12 39 1 ACGATTAAACGTTATTTACTTGATTATATATTGA 12 101 0 TCGGGCTTCCGTTATGTTTGCCGTTTCTGTATGT 0 173 1 CTATATGATTGTTATTTATTTCAATATATAATCA 12 81 1 CGAAAGTCAGGTTTTCTTTACTGCGAGGTTGTAT 1 140 1 TTTTTTCTTAGTTTTCTTTCCCTAAGAATAAAAA 9 101 1 AAATTAATCGATTTTTTTTCTAATTTCATGACAT 10 69 0 TAAGTGCTAGGTTTTGTATAAAGTGCGGTATAAA 7 21 0 TGCTTACCCAATTTTTTTCATTTTTCAATCTGAC 11 145 1 TCATTATACAATTTTATATATATCGATTTTCGCT 10 137 1 TATAAATATTGTTATATATCAAGATGTTTTCTAT 6 55 0 ACGTAATAAGATTTTTTTTCATTTTATGCATAAA 8 71 0 ***** *** * * MAP Score: 14.0285 Motif 4 TGCCTCGCAGACCGCCATTCTGGCTCACTT 0 128 1 CCTTTCCACCACCGCACTTTTTGCGGCTTC 2 188 1 GAGAAATTTAACCGCACTTTCGATGAATTT 6 103 0 TTTATTTTATACCGCACTTTATACAAAACC 7 16 1 ATTTAAGATAACCGCACTTTATTAATGTTA 7 53 0 AGATTTAAACGCCATTTAAACGGGCGT 9 7 1 CAAAAAAGAAAACGCCCGTTTAAATGGCGT 9 18 0 GGCAGAAATATCCGCCCTTCATGACTATTA 11 20 0 GGCGGATATTTCTGCCCTTTTGTTATTATA 11 34 1 ********** MAP Score: 13.7536 Motif 5 TTTTGGATTATTTTATCCTTGTTAGCGTTTGCA 1 211 1 GAGCAAAGAATTTTTTCAATTTATTGACCTCCG 2 136 0 TACAATGAGTTATCTTCATTTTTATAGACTAGT 3 33 1 ATGTAGAAAGTTTATTTCTTTTTAAAAAGCCGT 3 107 1 AACCTTATCTCCTTTTCGTCATTATTGCTGCCT 3 252 1 TGCGTCAAGGCGTATTCTATTTTAAATTCAAAG 4 31 0 TATATCAAGATGTTTTCTATTTTTCTCGTTAAA 6 42 0 GGCATTAAGTCCTTTTCATTATTAACAATTCAC 6 168 1 TAATAAGATTTTTTTTCATTTTATGCATAAACA 8 69 0 TTTAAACGGGCGTTTTCTTTTTTGTTTAAATTC 9 24 1 AAAGATCTGATTTTTTCTTAGTTTTCTTTCCCT 9 91 1 GCATTGCCCCTTTTTTTATTCTTAGGGAAAGAA 9 114 0 CCAAAGCCCCTGTTTTCAATAATTCCCGCCCAC 9 151 1 CTATTTCTTTTGTTTTCTTTGTTTTG 9 211 1 GAGTCCCAACCTTTTTTGTTGTTTCAAAATTAA 10 23 1 TTAATCGATTTTTTTTCTAATTTCATGACATGG 10 67 0 ATTCGAAAGATTTATTCAATCTTTAGTTTATAA 10 101 0 GCTTACCCAATTTTTTTCATTTTTCAATCTGAC 11 146 1 * ***** ** ** MAP Score: 13.0081 Motif 6 TCCAAATATTGCGTGCGTGTATTTGAAAA 0 7 1 GAGAATTGTAAACGCGTGCGTGAATTTTTTCA 0 33 0 AAATTAACCGCTTGCGTGCGTGAACTGAAAAG 0 70 1 GGTTTTCTTTACTGCGAGGTTGTATGAACGCA 1 149 1 AAAATGCTATACTGCGCGCGCGCAAAATTTGC 2 79 1 AGCCGCAAAAAGTGCGGTGGTGGAAAGGAAAA 2 184 0 AACCTGCAAGACTGCAGGGGCGACATATAAAA 6 219 0 * **** ***** MAP Score: 7.22709 Motif 7 TCACATTCCTAAAAGGATTTAACTTTGCCTC 0 103 1 GCAAACGCTAACAAGGATAAAATAATCCAAA 1 212 0 ATTTTTTTCTAAAAGGTTTGACATATTTCCC 2 53 0 CGAAAAGGAGATAAGGTTATATTCCTAGTTT 3 239 0 TTAATCATAAATAAGGATGTAATA 3 286 1 TTAACAAAAGGTTTCACAAACCTTTG 4 5 1 GTTAATAATGAAAAGGACTTAATGCCTTAGA 6 163 0 AATTATTGCAAAAACGGTTGATTTTGGTGCC 8 267 1 GAAACAACAAAAAAGGTTGGGACTCCCCAAC 10 17 0 GGCTATTTAGATAAGGATTCATTTTGCTTAC 11 121 1 AATCAAGTAAATAACGTTTAATCGTAGGAGA 12 110 1 ********* * MAP Score: 2.60287