AlignACE 3.0 10/20/99 AlignACE2 -i HI/HI_operons010_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944237488 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 HI0213 164 oligopeptide transporter, periplasmic-binding protein, putative #1 HI0637 128 tryptophanyl-tRNA synthetase (trpS) #2 HI0853 140 heme-binding lipoprotein (dppA) #3 HI0861 191 virulence-associated protein (vacB) #4 HI1123 80 oligopeptide ABC transporter, permease protein (oppB) #5 HI1124 295 oligopeptide ABC transporter, periplasmic-binding protein (oppA) #6 HI1187 89 dipeptide ABC transporter, permease protein (dppB) #7 HI1188 300 DNA helicase II (uvrD) #8 HI1311 148 phenylalanyl-tRNA synthetase, alpha subunit (pheS) #9 HI1312 33 phenylalanyl-tRNA synthetase, beta subunit (pheT) #10 HI1314 52 lipoprotein (nlpC) #11 HI1638 69 peptide ABC transporter, periplasmic-binding protein (sapA) #12 HI1733 82 exoribonuclease II (rnb) #13 HI1734 79 enoyl-(acyl-carrier-protein) reductase (fabI) Motif 1 AAAGAAAAATACCAAAATTTTTATTTTGACT 0 22 1 AGCATTTTTAACCTAGCTTTTGAACTCGAAC 1 44 1 ACCTCAATGTTAGGCAGGGAA 2 129 0 AATTTTTACCGCGCTTTTCATACTTTAA 3 7 1 CTATAAAAAGTCATCACTGTTATAGTGCTGG 3 44 1 TGTCAAACTCTCCGCACTTTTTAAAACTGTA 3 163 1 GTATTTTTTGACCGCACTTTTCGCCCATTTT 4 46 1 GCCTCTCATATCATCACTTTTAGCAATTTTT 5 134 1 CAACTCACAAAACTCAATTTTTCTTCAAATA 5 183 1 GTAAAAATTCACCGCACTCTTCAAAGAAATT 6 40 0 GTGAATTTTTACCGCACTTTTATTATCTACG 6 59 1 ACTATTTATAAACAAACTTTTAATTCGTTTA 7 101 0 AAAATGTTCTACCCTACTTTTGATATACTCA 7 209 1 GTAGAAATTCACCGCACTTTTTGTTGCTTA 10 9 0 GTGAATTTCTACCGCACTTTTCATATGAAAA 10 28 1 GGGAAAATAGTCCACATTTTTAATTGAACAA 13 20 0 *** ******* MAP Score: 33.5388 Motif 2 GTTTGTTTATAAATAGTATAAAAATAGCTTTCAA 7 115 1 TGTGTCTAATAAATCGCTAAAAAAATTGCTAAAA 5 151 0 ACGATAGCACAATTAGCATTAAAAGGGTAATTTA 5 51 1 CATACTTTAAAAATATCTATAAAAAGTCATCACT 3 28 1 TTCAATTTTAAAATATCCTTAAAATATACAGTGA 3 93 1 TAGTAAATATCAGGAAAACGTTTCCGTT 1 4 1 TCAAAGAAATTAATCGGTAAAAAATATAATACTC 6 17 0 GTCTTCTATTTATTAGCTCAAAAATTCATTTTTG 5 233 0 ATTTCCTGACAAATCTTTACAAAAATGAATTTTT 5 214 1 TCCCGCTTAATATTATTCTTAAAATGTTCTACCC 7 189 1 GAAACATCGTTATTATTTTAAAAAAGAGAAAAGG 12 49 0 GTCAGGAAATTATTTGAAGAAAAATTGAGTTTTG 5 190 0 CATTAGGCGATATTTTTATAAAAAGTCTTCTATT 5 257 0 TCATCATGGGTATTTTTGGAAAAATGAGAAACCT 7 47 1 TAAAGTATGAAAAGCGCGGTAAAAATT 3 3 0 GAATGAGAGGTAAACGAATTAAAAGTTTGTTTAT 7 91 1 AACTCCAACCAAAATGGGCGAAAAGTGCGGTCAA 4 53 0 CGCACTTTTTAAAACTGTAAAAAATA 3 175 1 AAAGTAAAAGAATAATGCGAAAAATCATTGGCTT 8 58 0 GTAGATAATAAAAGTGCGGTAAAAATTCACCGCA 6 55 0 CACCAACAAGAAATATCAATAAGATATAAGCAAA 2 58 0 TCCACATTTTTAATTGAACAAAGAAGAAACA 13 7 0 ****** **** MAP Score: 20.0906 Motif 3 AGTGCGGTCAAAAAATACGACGATTTTTAACCGCACTT 4 26 0 AGTGCGGTAGAAATTCACCGCACTTTTTGTTGCTTA 10 8 0 TTACAGTGTCAAACTCTCCGCACTTTTTAAAACTGTAA 3 157 1 ACATCATATCAGAAACTCTAGGCTTTTTTAATGTTCGA 1 69 0 TTTTGAGCTAATAAATAGAAGACTTTTTATAAAAATAT 5 244 1 AAGTCAAAATAAAAATTTTGGTATTTTTCTTTAATGAT 0 16 0 ATTTCTTTGAAGAGTGCGGTGAATTTTTACCGCACTTT 6 41 1 TTAATTTGTTATAATCCATAGAATTTTTTTATTTAAAA 2 11 1 TAGACACAACTCACAAAACTCAATTTTTCTTCAAATAA 5 177 1 TCTCATATCATCACTTTTAGCAATTTTTTTAGCGATTT 5 137 1 CCCAGCACTATAACAGTGATGACTTTTTATAGATATTT 3 38 0 TGACAAATCTTTACAAAAATGAATTTTTGAGCTAATAA 5 220 1 GGAATAGCGAATACGTTATTCCATTTTTATTTTTGATA 8 21 1 AAAATCAGGGAAAATAGTCCACATTTTTAATTGAACAA 13 20 0 AATAAGATATAAGCAAATTTCCCTTTTTTTAAATAAAA 2 37 0 TCTCTTTTTTAAAATAATAACGATGTTTCAAAATAACT 12 54 1 ATATTTTCCTACATAAATTACCCTTTTAATGCTAATTG 5 60 0 AGCCTCCTTGTCATTAGGCGATATTTTTATAAAAAGTC 5 264 0 TCAATATCCTAGCCATTTTTACTAATATGC 11 2 1 * * * * ****** MAP Score: 18.4676 Motif 4 AATTTTGGTATTTTTCTTTAATGATCGATTT 0 10 0 AATACCAAAATTTTTATTTTGACTTTTGTTA 0 29 1 TACTAATTGGTTTTTATTTCACGCCAAGTGT 0 69 1 CCATAGAATTTTTTTATTTAAAAAAAGGGAA 2 26 1 CAAAACTCAATTTTTCTTCAAATAATTTCCT 5 190 1 AATAGAAGACTTTTTATAAAAATATCGCCTA 5 257 1 TTGAAAGCTATTTTTATACTATTTATAAACA 7 118 0 CCGCTTAATATTATTCTTAAAATGTTCTACC 7 191 1 CTCACAAATCTTATTGTTTCACAAGATAGAT 7 236 1 CGTTATTCCATTTTTATTTTTGATAAGCCAA 8 34 1 ATTTTTCGCATTATTCTTTTACTTTTTAAGG 8 67 1 ATTACTCGGTTTTTTATTTTATAGAGAAAAG 8 111 1 TTGTTGTTATCCTTTTAATTCAAATCC 9 16 0 TCTACCGCACTTTTCATATGAAAAGGT 10 35 1 TTTTTCTTACATTCTTTTTTA 12 0 1 TGAAACATCGTTATTATTTTAAAAAAGAGAA 12 53 0 ATAGTCCACATTTTTAATTGAACAAAGAAGA 13 14 0 ********* * MAP Score: 15.2109 Motif 5 AAATACCAAAATTTTTATTTTGACTTTTGTTACCACAA 0 28 1 TAAATATAGCATTTTTAACCTAGCTTTTGAACTCGAAC 1 37 1 AATTTTTACCGCGCTTTTCATACTTTAAA 3 1 1 AACAGTGATGACTTTTTATAGATATTTTTAAAGTATGA 3 27 0 ACGGGGATAAAATTATCACTGTATATTTTAAGGATATT 3 104 0 AATCGTCGTATTTTTTGACCGCACTTTTCGCCCATTTT 4 39 1 TCATATCATCACTTTTAGCAATTTTTTTAGCGATTTAT 5 139 1 CAAAACTCAATTTTTCTTCAAATAATTTCCTGACAAAT 5 190 1 GAGTATTATATTTTTTACCGATTAATTTCTTTGAAGAG 6 17 1 GAGTGCGGTGAATTTTTACCGCACTTTTATTATCTACG 6 52 1 TATTCTTAAAATGTTCTACCCTACTTTTGATATACTCA 7 202 1 TAAGCCAATGATTTTTCGCATTATTCTTTTACTTTTTA 8 57 1 AAGTGCGGTGAATTTCTACCGCACTTTTCATATGAAAA 10 21 1 TTGACACATAATTTATCACAATGCATTTGTT 11 48 1 TTTTTCTTACATTCTTTTTTAGGCAGGCT 12 1 1 * **** * **** MAP Score: 12.6651 Motif 6 AATACCAAAATTTTTATTTTGACTTTTGTTACCACAA 0 29 1 AAATATAGCATTTTTAACCTAGCTTTTGAACTCGAAC 1 38 1 ATCATATCAGAAACTCTAGGCTTTTTTAATGTTCGAG 1 68 0 AATTTGTTATAATCCATAGAATTTTTTTATTTAAAAA 2 13 1 AGATATAAGCAAATTTCCCTTTTTTTAAATAAAAAAA 2 34 0 AATTTTTACCGCGCTTTTCATACTTTAA 3 1 1 CAGTGATGACTTTTTATAGATATTTTTAAAGTATGAA 3 26 0 ATCACTGTATATTTTAAGGATATTTTAAAATTGAAGA 3 91 0 TTACAGTGTCAAACTCTCCGCACTTTTTAAAACTGTA 3 157 1 GTGCGGTTAAAAATCGTCGTATTTTTTGACCGCACTT 4 28 1 TTTTGACCGCACTTTTCGCCCATTTTGGTTGGAGTTG 4 51 1 TCATATCATCACTTTTAGCAATTTTTTTAGCGATTTA 5 139 1 AGTGCGGTGAATTTTTACCGCACTTTTATTATCTACG 6 53 1 GCTATTATTGTCATCATGGGTATTTTTGGAAAAATGA 7 37 1 ATTCTTAAAATGTTCTACCCTACTTTTGATATACTCA 7 203 1 GATAAGCCAATGATTTTTCGCATTATTCTTTTACTTT 8 55 1 CTTGGTATTATCATTACTCGGTTTTTTATTTTATAGA 8 99 1 GTGCGGTAGAAATTCACCGCACTTTTTGTTGCTTA 10 8 0 TCAATATCCTAGCCATTTTTACTAATATGC 11 3 1 TTTTTCTTACATTCTTTTTTAGGCAGGC 12 1 1 AAATGTGGACTATTTTCCCTGATTTTAGGTTTTTGCT 13 32 1 * *** * ***** MAP Score: 11.979 Motif 7 AATTTCCCTTTTTTTAAATAAAAAAATTCTAT 2 28 0 GCGCTTTTCATACTTTAAAAATATCTATAAAA 3 20 1 TTTAAAAATATCTATAAAAAGTCATCACTGTT 3 33 1 ATTTTAAGGATATTTTAAAATTGAAGAACTTA 3 86 0 GTCAGGAAATTATTTGAAGAAAAATTGAGTTT 5 192 0 TCCTGACAAATCTTTACAAAAATGAATTTTTG 5 217 1 AGGCGATATTTTTATAAAAAGTCTTCTATTTA 5 255 0 CCGATTAATTTCTTTGAAGAGTGCGGTGAATT 6 34 1 TAAAAGTTTGTTTATAAATAGTATAAAAATAG 7 110 1 TAGGGTAGAACATTTTAAGAATAATATTAAGC 7 193 0 GATTTGTGAGTATATCAAAAGTAGGGTAGAAC 7 214 0 CAAATCTTATTGTTTCACAAGATAGATGGGAC 7 240 1 TAATACCAAGTCCTTAAAAAGTAAAAGAATAA 8 77 0 ACCTTTTCATATGAAAAGTGCGGTAGAAA 10 33 0 GCCTTTTCTCTTTTTTAAAATAATAACGATGT 12 48 1 ATAATAACGATGTTTCAAAATAACT 12 67 1 TTTATTTGCAAATTCGTTTGAGCA 13 65 0 * *** ****** MAP Score: 4.01728 Motif 8 GTAACAAAAGTCAAAATAAAAATTTTGGTATT 0 29 0 TTCTTCTTATTTTGGATTAAAACCGAAA 0 146 1 CCATAGAATTTTTTTATTTAAAAAAAGGGAAA 2 26 1 CGCGCTTTTCATACTTTAAAAATATCTATAAA 3 19 1 GTTAAGTTCTTCAATTTTAAAATATCCTTAAA 3 84 1 TATTTTTTACAGTTTTAAAAAGTGCGGAGA 3 171 0 TCCTGACAAATCTTTACAAAAATGAATTTTTG 5 217 1 AATAGAAGACTTTTTATAAAAATATCGCCTAA 5 257 1 ATCATGGGTATTTTTGGAAAAATGAGAAACCT 7 49 1 CGTTTACCTCTCATTCCTAAAATGCAAGGTTT 7 75 0 TTGTTTATAAATAGTATAAAAATAGCTTTCAA 7 117 1 CCGCTTAATATTATTCTTAAAATGTTCTACCC 7 191 1 TCTTTTCTCTATAAAATAAAAAACCGAGTAAT 8 111 0 TTTCTCGGATTTGAATTAAAAGGATAACAAC 9 9 1 ATTGTAAGGCATATTAGTAAAAATGGCTAGGA 11 16 0 CTGCCTTTTCTCTTTTTTAAAATAATAACGAT 12 46 1 TTCTTCTTTGTTCAATTAAAAATGTGGACTAT 13 13 1 TGCAAATTCGTTTGAGCAAAAACCTAAAATCA 13 51 0 *** * ****** MAP Score: 1.55519